Functional analysis of ATM variants in a high risk cohort provides insight into missing heritability

Cancer Genet. 2022 Jun:264-265:40-49. doi: 10.1016/j.cancergen.2022.03.003. Epub 2022 Mar 20.

Abstract

Variants of unknown significance (VUS) remain a constant challenge in the diagnosis of hereditary cancer and the counseling of patients with pedigrees suggestive of such a syndrome. In order to assess some of this limitation, several variants in the DNA repair gene ATM were selected from a cohort of high risk individuals with negative genetic diagnoses. ATM has proven a challenge in the counseling of patients due to its nature as a moderate penetrance gene. In this study, six ATM missense mutations with a high likelihood for pathogenicity were assessed through a battery of experiments to yield high fidelity information on their biochemical effect on ATM activity. We report that several of these variants show signs of reduced ATM function indicative of likely pathogenicity. With further study, this data may be used in clinic, improving diagnosis, surveillance, and outcome for patients carrying these mutations.

Keywords: ATM; Cancer genetics; Cancer predisposition; Inherited risk; Variants of unknown significance.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Ataxia Telangiectasia Mutated Proteins / genetics
  • Breast Neoplasms* / genetics
  • Cohort Studies
  • Female
  • Genetic Predisposition to Disease
  • Humans
  • Mutation / genetics
  • Neoplasms* / genetics
  • Pedigree
  • Penetrance

Substances

  • ATM protein, human
  • Ataxia Telangiectasia Mutated Proteins