Genetically programmed alternative splicing of NEMO mediates an autoinflammatory disease phenotype

J Clin Invest. 2022 Mar 15;132(6):e128808. doi: 10.1172/JCI128808.

Abstract

Host defense and inflammation are regulated by the NF-κB essential modulator (NEMO), a scaffolding protein with a broad immune cell and tissue expression profile. Hypomorphic mutations in inhibitor of NF-κB kinase regulatory subunit gamma (IKBKG) encoding NEMO typically present with immunodeficiency. Here, we characterized a pediatric autoinflammatory syndrome in 3 unrelated male patients with distinct X-linked IKBKG germline mutations that led to overexpression of a NEMO protein isoform lacking the domain encoded by exon 5 (NEMO-Δex5). This isoform failed to associate with TANK binding kinase 1 (TBK1), and dermal fibroblasts from affected patients activated NF-κB in response to TNF but not TLR3 or RIG-I-like receptor (RLR) stimulation when isoform levels were high. By contrast, T cells, monocytes, and macrophages that expressed NEMO-Δex5 exhibited increased NF-κB activation and IFN production, and blood cells from these patients expressed a strong IFN and NF-κB transcriptional signature. Immune cells and TNF-stimulated dermal fibroblasts upregulated the inducible IKK protein (IKKi) that was stabilized by NEMO-Δex5, promoting type I IFN induction and antiviral responses. These data revealed how IKBKG mutations that lead to alternative splicing of skipping exon 5 cause a clinical phenotype we have named NEMO deleted exon 5 autoinflammatory syndrome (NDAS), distinct from the immune deficiency syndrome resulting from loss-of-function IKBKG mutations.

Trial registration: ClinicalTrials.gov NCT00001788 NCT00001372 NCT02974595.

Keywords: Genetic diseases; Genetics; Immunology; Inflammation; Innate immunity; Signal transduction.

Publication types

  • Research Support, N.I.H., Intramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Alternative Splicing
  • Child
  • Hereditary Autoinflammatory Diseases*
  • Humans
  • I-kappa B Kinase / genetics
  • I-kappa B Kinase / metabolism
  • Immunologic Deficiency Syndromes* / genetics
  • Male
  • NF-kappa B / genetics
  • NF-kappa B / metabolism
  • Phenotype

Substances

  • IKBKG protein, human
  • NF-kappa B
  • I-kappa B Kinase

Associated data

  • ClinicalTrials.gov/NCT00001788
  • ClinicalTrials.gov/NCT00001372
  • ClinicalTrials.gov/NCT02974595