RPA-Cas12aDS: A visual and fast molecular diagnostics platform based on RPA-CRISPR-Cas12a method for infectious bursal disease virus detection

J Virol Methods. 2022 Jun:304:114523. doi: 10.1016/j.jviromet.2022.114523. Epub 2022 Mar 12.

Abstract

Infectious bursal disease (IBD), a major disease of birds, is caused by infectious bursal disease virus (IBDV). The disease can lead to immunosuppression, resulting in huge economic losses in the poultry industry. A specific, rapid, and simple detection method is important for the early diagnosis and prevention and control of IBDV. In this study, we established a naked-eye visual IBDV detection method, named "RPA-Cas12aDS", by combining recombinase polymerase amplification (RPA) with CRISPR-Cas12a-based nucleic acid detection. The detection process can be accomplished in 50 min, and uncapping contamination can be avoided. The detection results can be observed under blue or UV light. We used the RPA-Cas12aDS method to detect IBDV in bursa of Fabricius tissue samples of chickens, and the results were consistent with those obtained using commercial RT-PCR kits. This method presents great potential for visual, rapid, and point-of-care molecular diagnostics of IBDV in poultry.

Keywords: CRISPR-Cas12a system; Cleavage; Detection; RPA assay; RPA-CRISPR-Cas12a.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Birnaviridae Infections* / diagnosis
  • Birnaviridae Infections* / veterinary
  • CRISPR-Cas Systems
  • Chickens
  • Infectious bursal disease virus* / genetics
  • Nucleic Acid Amplification Techniques / methods
  • Pathology, Molecular
  • Poultry Diseases* / diagnosis
  • Recombinases / genetics

Substances

  • Recombinases