Thermokarst lakes are important aquatic ecosystems in cold regions, experiencing several changes due to global warming. However, the fundamental assembly mechanisms of microeukaryotic communities in thermokarst lakes are unknown. In this study, we examined the assembly processes and co-occurrence networks of microeukaryotic communities in sediment and water of thermokarst lakes in the Yellow River Source Area. Sediment microeukaryotic communities had a significantly lower α-diversity but higher β-diversity than water microeukaryotic communities. pH, sediment organic carbon, and total phosphorus significantly affected taxonomic and phylogenetic diversity of sediment communities, while conductivity was a significant driver for water communities. Both sediment and water microeukaryotic communities were strongly governed by dispersal limitation. However, deterministic processes, especially homogenous selection, were more relevant in structuring microeukaryotic communities in water than those in sediment. Changes in total nitrogen and phosphorus in sediment could contribute to shift its microeukaryotic communities from homogeneous selection to stochastic processes. Co-occurrence networks showed that water microeukaryotic communities are more complex and interconnected but have lower modularity than sediment microeukaryotic communities. The water microeukaryotic network had more modules than the sediment microeukaryotic network. These modules were dominated by different taxonomic groups and associated to different environmental variables.
Keywords: Qinghai–Tibet Plateau; co-occurrence; deterministic process; microeukaryotes; stochastic process.