Databases for intrinsically disordered proteins

Acta Crystallogr D Struct Biol. 2022 Feb 1;78(Pt 2):144-151. doi: 10.1107/S2059798321012109. Epub 2022 Jan 21.

Abstract

Intrinsically disordered regions (IDRs) lacking a fixed three-dimensional protein structure are widespread and play a central role in cell regulation. Only a small fraction of IDRs have been functionally characterized, with heterogeneous experimental evidence that is largely buried in the literature. Predictions of IDRs are still difficult to estimate and are poorly characterized. Here, an overview of the publicly available knowledge about IDRs is reported, including manually curated resources, deposition databases and prediction repositories. The types, scopes and availability of the various resources are analyzed, and their complementarity and overlap are highlighted. The volume of information included and the relevance to the field of structural biology are compared.

Keywords: databases; flexible proteins; intrinsically disordered proteins; protein ensembles.

Publication types

  • Review

MeSH terms

  • Databases, Factual
  • Intrinsically Disordered Proteins* / chemistry
  • Intrinsically Disordered Proteins* / metabolism
  • Protein Conformation

Substances

  • Intrinsically Disordered Proteins