Arenibacterium arenosum sp. nov., isolated from sea sand

Arch Microbiol. 2022 Jan 20;204(2):147. doi: 10.1007/s00203-022-02760-w.

Abstract

A Gram-negative, non-motile, short rod-shaped aerobic bacterial strain CAU 1593T was isolated from a coastal sand sample collected in the Republic of Korea. Cells of strain CAU 1593T grew optimally at 30 °C and pH 7.5 in 4% (w/v) NaCl. Phylogenetic analysis based on the 16S rRNA gene sequence revealed that strain CAU 1593T had the highest similarity to Arenibacterium halophilum (97.5%). The whole genome of strain CAU 1593T was 3,979,826 bp with 26 contigs, and the DNA G + C content was 64.3 mol%. The major fatty acid of strain CAU 1593 T was summed feature 8 (C18:1 ω7c/C18:1 ω6c). Q-10 was the only respiratory quinone. The polar lipids were composed of diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, two phosphoglycolipids, an unidentified glycolipid, and an unidentified lipid. Based on the results of chemotaxonomic, phylogenetic, and phenotypic analyses, strain CAU 1593T represents a novel species in the genus Arenibacterium, which is named Arenibacterium arenosum sp. nov. The type strain is CAU 1593T (= KCTC 82402T = MCCC 1K05671T).

Keywords: 16S rRNA gene sequence; Alphaproteobacteria· sea sand; Arenibacterium arenosum; Genome; Rhodobacteraceae; Sequencing.

MeSH terms

  • Bacterial Typing Techniques
  • DNA, Bacterial / genetics
  • Phospholipids*
  • Phylogeny
  • RNA, Ribosomal, 16S / genetics
  • Sand*
  • Sequence Analysis, DNA
  • Silicon Dioxide
  • Ubiquinone

Substances

  • DNA, Bacterial
  • Phospholipids
  • RNA, Ribosomal, 16S
  • Sand
  • Ubiquinone
  • Silicon Dioxide