Computational Prediction of Bacteriophage Host Ranges

Microorganisms. 2022 Jan 12;10(1):149. doi: 10.3390/microorganisms10010149.

Abstract

Increased antibiotic resistance has prompted the development of bacteriophage agents for a multitude of applications in agriculture, biotechnology, and medicine. A key factor in the choice of agents for these applications is the host range of a bacteriophage, i.e., the bacterial genera, species, and strains a bacteriophage is able to infect. Although experimental explorations of host ranges remain the gold standard, such investigations are inherently limited to a small number of viruses and bacteria amendable to cultivation. Here, we review recently developed bioinformatic tools that offer a promising and high-throughput alternative by computationally predicting the putative host ranges of bacteriophages, including those challenging to grow in laboratory environments.

Keywords: bacterial hosts; bacteriophages; bioinformatic tools; host ranges.

Publication types

  • Review