Label-free and sensitive detection of RNA demethylase FTO with primer generation rolling circle amplification

Chem Commun (Camb). 2022 Feb 1;58(10):1565-1568. doi: 10.1039/d1cc06493b.

Abstract

We develop for the first time a label-free fluorescent method for sensitive detection of fat mass and obesity-associated protein (FTO) activity using MazF-mediated primer generation rolling circle amplification. This method is very simple with ultrahigh sensitivity and good specificity, and it can detect FTO activity at the single-cell level. Moreover, this method can be applied for the measurement of kinetic parameters and the screening of FTO inhibitors.

MeSH terms

  • Alpha-Ketoglutarate-Dependent Dioxygenase FTO / analysis*
  • Alpha-Ketoglutarate-Dependent Dioxygenase FTO / metabolism
  • Cell Line, Tumor
  • DNA, Single-Stranded / chemistry
  • DNA, Single-Stranded / metabolism*
  • DNA-Binding Proteins / metabolism
  • Endoribonucleases / metabolism
  • Escherichia coli Proteins / metabolism
  • Humans
  • Limit of Detection
  • Native Polyacrylamide Gel Electrophoresis
  • Nucleic Acid Amplification Techniques / methods*
  • Single-Cell Analysis
  • Spectrometry, Fluorescence

Substances

  • DNA, Single-Stranded
  • DNA-Binding Proteins
  • Escherichia coli Proteins
  • MazF protein, E coli
  • Alpha-Ketoglutarate-Dependent Dioxygenase FTO
  • Endoribonucleases