Critical residues for proteolysis activity of maize chlorotic dwarf virus (MCDV) 3C-like protease and comparison of activity of orthologous waikavirus proteases

Virology. 2022 Feb:567:57-64. doi: 10.1016/j.virol.2021.12.008. Epub 2021 Dec 27.

Abstract

Maize chlorotic dwarf virus (MCDV) encodes a 3C-like protease that cleaves the N-terminal polyprotein (R78) as previously demonstrated. Here, we examined amino acid residues required for catalytic activity of the protease, including those in the predicted catalytic triad, amino acid residues H2667, D2704, and C2798, as well as H2817 hypothesized to be important in substrate binding. These and other residues were targeted for mutagenesis and tested for proteolytic cleavage activity on the N-terminal 78 kDa MCDV-S polyprotein substrate to identify mutants that abolished catalytic activity. Mutations that altered the predicted catalytic triad residues and H2817 disrupted MCDV-S protease activity, as did mutagenesis of a conserved tyrosine residue, Y2774. The protease activity and R78 cleavage of orthologs from divergent MCDV isolates MCDV-Tn and MCDV-M1, and other waikavirus species including rice tungro spherical virus (RTSV) and bellflower vein chlorosis virus (BVCV) were also examined.

Keywords: 3C-like protease; Polyprotein cleavage; Waikavirus.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • 3C Viral Proteases / chemistry*
  • 3C Viral Proteases / genetics
  • 3C Viral Proteases / metabolism
  • Amino Acid Sequence
  • Binding Sites
  • Cell-Free System / metabolism
  • Gene Expression Regulation, Viral*
  • Genome, Viral*
  • Models, Molecular
  • Mutation
  • Protein Binding
  • Protein Biosynthesis
  • Protein Conformation, alpha-Helical
  • Protein Conformation, beta-Strand
  • Protein Interaction Domains and Motifs
  • Proteolysis
  • Seeds / chemistry
  • Seeds / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Structure-Activity Relationship
  • Substrate Specificity
  • Transcription, Genetic
  • Triticum / virology
  • Waikavirus / enzymology
  • Waikavirus / genetics*
  • Zea mays / virology

Substances

  • 3C Viral Proteases