Dual regulation of lipid droplet-triacylglycerol metabolism and ERG9 expression for improved β-carotene production in Saccharomyces cerevisiae

Microb Cell Fact. 2022 Jan 4;21(1):3. doi: 10.1186/s12934-021-01723-y.

Abstract

Background: The limitation of storage space, product cytotoxicity and the competition for precursor are the major challenges for efficiently overproducing carotenoid in engineered non-carotenogenic microorganisms. In this work, to improve β-carotene accumulation in Saccharomyces cerevisiae, a strategy that simultaneous increases cell storage capability and strengthens metabolic flux to carotenoid pathway was developed using exogenous oleic acid (OA) combined with metabolic engineering approaches.

Results: The direct separation of lipid droplets (LDs), quantitative analysis and genes disruption trial indicated that LDs are major storage locations of β-carotene in S. cerevisiae. However, due to the competition for precursor between β-carotene and LDs-triacylglycerol biosynthesis, enlarging storage space by engineering LDs related genes has minor promotion on β-carotene accumulation. Adding 2 mM OA significantly improved LDs-triacylglycerol metabolism and resulted in 36.4% increase in β-carotene content. The transcriptome analysis was adopted to mine OA-repressible promoters and IZH1 promoter was used to replace native ERG9 promoter to dynamically down-regulate ERG9 expression, which diverted the metabolic flux to β-carotene pathway and achieved additional 31.7% increase in β-carotene content without adversely affecting cell growth. By inducing an extra constitutive β-carotene synthesis pathway for further conversion precursor farnesol to β-carotene, the final strain produced 11.4 mg/g DCW and 142 mg/L of β-carotene, which is 107.3% and 49.5% increase respectively over the parent strain.

Conclusions: This strategy can be applied in the overproduction of other heterogeneous FPP-derived hydrophobic compounds with similar synthesis and storage mechanisms in S. cerevisiae.

Keywords: ERG9 down-regulation; Lipid droplets; Oleic acid; Saccharomyces cerevisiae; β-carotene.

MeSH terms

  • Farnesyl-Diphosphate Farnesyltransferase / genetics*
  • Gene Expression Regulation, Fungal*
  • Lipid Droplets / metabolism*
  • Metabolic Engineering / methods
  • Saccharomyces cerevisiae / genetics*
  • Saccharomyces cerevisiae / metabolism*
  • Saccharomyces cerevisiae Proteins / genetics*
  • Triglycerides / genetics*
  • Triglycerides / metabolism*
  • beta Carotene / analysis
  • beta Carotene / biosynthesis*
  • beta Carotene / genetics

Substances

  • Saccharomyces cerevisiae Proteins
  • Triglycerides
  • beta Carotene
  • ERG9 protein, S cerevisiae
  • Farnesyl-Diphosphate Farnesyltransferase