Rapid discovery of diverse neutralizing SARS-CoV-2 antibodies from large-scale synthetic phage libraries

MAbs. 2022 Jan-Dec;14(1):2002236. doi: 10.1080/19420862.2021.2002236.

Abstract

Coronavirus disease 2019 (COVID-19) is an evolving global public health crisis in need of therapeutic options. Passive immunization of monoclonal antibodies (mAbs) represents a promising therapeutic strategy capable of conferring immediate protection from SARS-CoV-2 infection. Herein, we describe the discovery and characterization of neutralizing SARS-CoV-2 IgG and VHH antibodies from four large-scale phage libraries. Each library was constructed synthetically with shuffled complementarity-determining region loops from natural llama and human antibody repertoires. While most candidates targeted the receptor-binding domain of the S1 subunit of SARS-CoV-2 spike protein, we also identified a neutralizing IgG candidate that binds a unique epitope on the N-terminal domain. A select number of antibodies retained binding to SARS-CoV-2 variants Alpha, Beta, Gamma, Kappa and Delta. Overall, our data show that synthetic phage libraries can rapidly yield SARS-CoV-2 S1 antibodies with therapeutically desirable features, including high affinity, unique binding sites, and potent neutralizing activity in vitro, and a capacity to limit disease in vivo.

Keywords: COVID-19; SARS-CoV-2; neutralizing antibody; spike glycoprotein; synthetic libraries.

MeSH terms

  • Animals
  • Antibodies, Neutralizing / genetics
  • Antibodies, Neutralizing / immunology*
  • Antibodies, Neutralizing / metabolism
  • Antibodies, Neutralizing / pharmacology
  • Antibodies, Viral / genetics
  • Antibodies, Viral / immunology*
  • Antibodies, Viral / metabolism
  • Antibody Specificity
  • Binding Sites, Antibody
  • COVID-19 / immunology*
  • COVID-19 / metabolism
  • COVID-19 / prevention & control
  • COVID-19 / virology
  • Cell Surface Display Techniques*
  • Chlorocebus aethiops
  • Disease Models, Animal
  • Epitopes
  • Female
  • Host-Pathogen Interactions
  • Immunoglobulin G / genetics
  • Immunoglobulin G / immunology*
  • Immunoglobulin G / metabolism
  • Immunoglobulin G / pharmacology
  • Mesocricetus
  • Peptide Library*
  • SARS-CoV-2 / immunology*
  • SARS-CoV-2 / pathogenicity
  • Single-Domain Antibodies / genetics
  • Single-Domain Antibodies / immunology*
  • Single-Domain Antibodies / metabolism
  • Single-Domain Antibodies / pharmacology
  • Spike Glycoprotein, Coronavirus / immunology*
  • Vero Cells

Substances

  • Antibodies, Neutralizing
  • Antibodies, Viral
  • Epitopes
  • Immunoglobulin G
  • Peptide Library
  • Single-Domain Antibodies
  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2