Bioinformatics analysis of candidate genes and potential therapeutic drugs targeting adipose tissue in obesity

Adipocyte. 2022 Dec;11(1):1-10. doi: 10.1080/21623945.2021.2013406.

Abstract

Obesity is a complex medical condition that affects multiple organs in the body. However, the underlying mechanisms of obesity, as well as its treatment, are largely unexplored. The focus of this research was to use bioinformatics to discover possible treatment targets for obesity. To begin, the GSE133099 database was used to identify 364 differentially expressed genes (DEGs). Then, DEGs were subjected to tissue-specific analyses and enrichment analyses, followed by the creation of a protein-protein interaction (PPI) network and generation of a drug-gene interaction database to screen key genes and potential future drugs targeting obesity. Findings have illustrated that the tissue-specific expression of neurologic markers varied significantly (34.7%, 52/150). Among these genes, Lep, ApoE, Fyn, and FN1 were the key genes observed in the adipocyte samples from obese patients relative to the controls. Furthermore, nine potential therapeutic drugs (dasatinib, ocriplasmin, risperidone, gemfibrozil, ritonavir, fluvastatin, pravastatin, warfarin, atorvastatin) that target the key genes were also screened and selected. To conclude the key genes discovered (Lep, ApoE, Fyn, and FN1), as well as 9 candidate drugs, could be used as therapeutic targets in treating obesity.

Keywords: Obesity; adipocyte; bioinformatics; biomarkers; drug-gene interaction; tissue-specific gene expression.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adipose Tissue
  • Computational Biology*
  • Gene Expression Profiling
  • Gene Regulatory Networks
  • Humans
  • Obesity / drug therapy
  • Obesity / genetics
  • Pharmaceutical Preparations*

Substances

  • Pharmaceutical Preparations

Grants and funding

Thiswork was supported by the National Natural Science Foundation of China (81760049, 82160070, 82100308), National Natural Science Foundation excellent youth cultivation project (20202ZDB01017), Jiangxi Science and Technology Innovation Platform Project (20165BCD41005), Natural Science Foundation of Jiangxi Province of China (20192BAB205033, 20202BABL216035), Science and technology planning project of Jiangxi Provincial Department of Education (GJJ200101); National Natural Science Foundation of China; Jiangxi Science and Technology Innovation Platform Project; Natural Science Foundation of Jiangxi Province of China; National Natural Science Foundation of China; Jiangxi Science and Technology Innovation Platform Project; Natural Science Foundation of Jiangxi Province of China; National Natural Science Foundation of China; Jiangxi Science and Technology Innovation Platform Project; Natural Science Foundation of Jiangxi Province of China.