Multiple conformations in solution of the maize C4-phosphoenolpyruvate carboxylase isozyme

Fátima Barreda-Huerta; Ismael Bustos-Jaimes; Carlos Mújica-Jiménez; Rosario A Muñoz-Clares

doi:10.1016/j.heliyon.2021.e08464

Multiple conformations in solution of the maize C₄-phosphoenolpyruvate carboxylase isozyme

Heliyon. 2021 Nov 25;7(11):e08464. doi: 10.1016/j.heliyon.2021.e08464. eCollection 2021 Nov.

Authors

Fátima Barreda-Huerta¹, Ismael Bustos-Jaimes², Carlos Mújica-Jiménez¹, Rosario A Muñoz-Clares¹

Affiliations

¹ Departamento de Bioquímica, Facultad de Química, Universidad Nacional Autónoma de México, México DF, 04510, Mexico.
² Departamento de Bioquímica, Facultad de Medicina, Universidad Nacional Autónoma de México, México DF, 04510, Mexico.

Abstract

The photosynthetic phosphoenolpyruvate carboxylase isozyme from C₄ plants (PEPC-C₄) has a complex allosteric regulation, involving positive cooperativity in binding the substrate phosphoenolpyruvate as well as positive and negative allosteric effectors. Besides the proposed R- and T-states, previous kinetic results suggested functionally relevant different R-states of the maize enzyme (ZmPEPC-C₄) elicited by PEP or its two kinds of activators, glucose 6-phosphate or glycine. To detect these different R-state conformations, we used as conformational probes the fluorescence of 8-anilino-1-naphthalene sulfonate (ANS), near-UV circular dichroism (CD) spectroscopy, and limited proteolysis by trypsin. Phosphoenolpyruvate and malate binding caused distinct concentration-dependent fluorescence changes of ZmPEPC-C₄/ANS, suggesting that they elicited conformational states different from that of the free enzyme, while glucose 6-phosphate or glycine binding did not produce fluorescence changes. Differences were also observed in the near UV CD spectra of the enzyme, free or complexed with its substrate or allosteric effectors. Additionally, differences in the trypsin-digestion fragmentation patterns, as well as in the susceptibility of the free and complexed enzyme to digestion and digestion-provoked loss of activity, provided evidence of several ZmPEPC-C₄ conformations in solution elicited by the substrate and the allosteric effectors. Using the already reported ZmPEPC-C₄ crystal structures and bioinformatics methods, we predicted that the most probable trypsin-cleavage sites are located in superficial flexible regions, which seems relevant for the protein dynamics underlying the function and allosteric regulation of this enzyme. Together, our findings agree with previous kinetic results, shed light on this enzyme's complex allosteric regulation, and place ZmPEPC-C₄ in the growing list of allosteric enzymes possessing an ensemble of closely related R-state conformations.

Keywords: ANS fluorescence; Allosteric regulation; C4 metabolism; CD spectroscopy; Ligand-induced conformational changes; Trypsin proteolysis; Zea mays L..