Partial synthetic models of FeMoco with sulfide and carbyne ligands: Effect of interstitial atom in nitrogenase active site

Proc Natl Acad Sci U S A. 2021 Dec 7;118(49):e2109241118. doi: 10.1073/pnas.2109241118.

Abstract

Nitrogen-fixing organisms perform dinitrogen reduction to ammonia at an Fe-M (M = Mo, Fe, or V) cofactor (FeMco) of nitrogenase. FeMco displays eight metal centers bridged by sulfides and a carbide having the MFe7S8C cluster composition. The role of the carbide ligand, a unique motif in protein active sites, remains poorly understood. Toward addressing how the carbon bridge affects the physical and chemical properties of the cluster, we isolated synthetic models of subsite MFe3S3C displaying sulfides and a chelating carbyne ligand. We developed synthetic protocols for structurally related clusters, [Tp*M'Fe3S3X]n-, where M' = Mo or W, the bridging ligand X = CR, N, NR, S, and Tp* = Tris(3,5-dimethyl-1-pyrazolyl)hydroborate, to study the effects of the identity of the heterometal and the bridging X group on structure and electrochemistry. While the nature of M' results in minor changes, the chelating, μ3-bridging carbyne has a large impact on reduction potentials, being up to 1 V more reducing compared to nonchelating N and S analogs.

Keywords: FeMoco model; carbide clusters; iron-sulfur clusters; nitrogenase; reduction potential.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Carbamates / chemistry
  • Carbamates / metabolism
  • Carbon / metabolism
  • Catalytic Domain
  • Crystallography, X-Ray
  • Iron / chemistry
  • Iron / metabolism*
  • Ligands
  • Models, Molecular
  • Molecular Structure
  • Molybdenum / chemistry
  • Molybdenum / metabolism*
  • Molybdoferredoxin / chemistry*
  • Molybdoferredoxin / metabolism
  • Nitrogen / metabolism
  • Nitrogen Fixation / physiology
  • Nitrogenase / metabolism
  • Oxidation-Reduction
  • Sulfides / chemistry
  • Sulfides / metabolism
  • Sulfur / metabolism

Substances

  • Carbamates
  • Ligands
  • Molybdoferredoxin
  • Sulfides
  • barban
  • Sulfur
  • Carbon
  • Molybdenum
  • Iron
  • Nitrogenase
  • Nitrogen