Efficient biosynthesis of nucleoside cytokinin angustmycin A containing an unusual sugar system

Nat Commun. 2021 Nov 17;12(1):6633. doi: 10.1038/s41467-021-26928-y.

Abstract

Angustmycin A has anti-mycobacterial and cytokinin activities, and contains an intriguing structure in which an unusual sugar with C5'-C6' dehydration is linked to adenine via an N-glycosidic bond. However, the logic underlying the biosynthesis of this molecule has long remained obscure. Here, we address angustmycin A biosynthesis by the full deciphering of its pathway. We demonstrate that AgmD, C, A, E, and B function as D-allulose 6-phosphate 3-epimerase, D-allulose 6-phosphate pyrophosphokinase, adenine phosphoallulosyltransferase, phosphoribohydrolase, and phosphatase, respectively, and that these collaboratively catalyze the relay reactions to biosynthesize angustmycin C. Additionally, we provide evidence that AgmF is a noncanonical dehydratase for the final step to angustmycin A via a self-sufficient strategy for cofactor recycling. Finally, we have reconstituted the entire six-enzyme pathway in vitro and in E. coli leading to angustmycin A production. These results expand the enzymatic repertoire regarding natural product biosynthesis, and also open the way for rational and rapid discovery of other angustmycin related antibiotics.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adenosine / analogs & derivatives*
  • Adenosine / biosynthesis
  • Adenosine / chemistry
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism
  • Biosynthetic Pathways
  • Cytokinins / biosynthesis*
  • Cytokinins / chemistry
  • Dehydration
  • Escherichia coli / genetics
  • Escherichia coli / metabolism
  • Fermentation
  • Molecular Structure
  • Multigene Family
  • Nucleosides / biosynthesis*
  • Nucleosides / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Streptomyces / enzymology
  • Streptomyces / genetics

Substances

  • Bacterial Proteins
  • Cytokinins
  • Nucleosides
  • Recombinant Proteins
  • angustmycin A
  • Adenosine

Supplementary concepts

  • Streptomyces angustmyceticus