Shotgun metagenomics evaluation of soil fertilization effect on the rhizosphere viral community of maize plants

Antonie Van Leeuwenhoek. 2022 Jan;115(1):69-78. doi: 10.1007/s10482-021-01679-4. Epub 2021 Nov 11.

Abstract

The need for sustainability in food supply has led to progressive increase in soil nutrient enrichment. Fertilizer application effects both biological and abiotic processes in the soil, of which the bacterial community that support viral multiplication are equally influenced. Nevertheless, little is known on the effect of soil fertilization on the Soil viral community composition and dynamics. In this study, we evaluated the influence of soil fertilization on the maize rhizosphere viral community growing in Luvisolic soil. The highest abundance of bacteriophages were detected in soil treated with 8 tons/ha compost manure (Cp8), 60 kg/ha inorganic fertilizer (N1), 4 tons/ha compost manure (Cp4) and the unfertilized control (Cn0). Our result showed higher relative abundance of Myoviridae, Podoviridae and Siphoviridae in 8 tons/ha organic manure (Cp8) fertilized compared to others. While Inoviridae and Microviridae were the most relative abundant phage families in 4 tons/ha organic manure (Cp4) fertilized soil. This demonstrate that soil fertilization with organic manure increases the abundance and diversity of viruses in the soil due to its soil conditioning effects.

Keywords: Agricultural crops; Bacteriophage community; Metagenomics; Soil fertilization; Viral diversity.

MeSH terms

  • Fertilization
  • Humans
  • Metagenomics*
  • Rhizosphere
  • Soil
  • Soil Microbiology
  • Zea mays*

Substances

  • Soil