Protocol for assessment of the efficiency of CRISPR/Cas RNP delivery to different types of target cells

PLoS One. 2021 Nov 9;16(11):e0259812. doi: 10.1371/journal.pone.0259812. eCollection 2021.

Abstract

Background: Delivery of CRISPR/Cas RNPs to target cells still remains the biggest bottleneck to genome editing. Many efforts are made to develop efficient CRISPR/Cas RNP delivery methods that will not affect viability of target cell dramatically. Popular current methods and protocols of CRISPR/Cas RNP delivery include lipofection and electroporation, transduction by osmocytosis and reversible permeabilization and erythrocyte-based methods.

Methods: In this study we will assess the efficiency and optimize current CRISPR/Cas RNP delivery protocols to target cells. We will conduct our work using molecular cloning, protein expression and purification, cell culture, flow cytometry (immunocytochemistry) and cellular imaging techniques.

Discussion: This will be the first extensive comparative study of popular current methods and protocols of CRISPR/Cas RNP delivery to human cell lines and primary cells. All protocols will be optimized and characterized using the following criteria i) protein delivery and genome editing efficacy; ii) viability of target cells after delivery (post-transduction recovery); iii) scalability of delivery process; iv) cost-effectiveness of the delivery process and v) intellectual property rights. Some methods will be considered 'research-use only', others will be recommended for scaling and application in the development of cell-based therapies.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • CRISPR-Cas Systems / genetics
  • Cell Culture Techniques
  • Cell Line
  • Cell- and Tissue-Based Therapy
  • Cloning, Molecular / methods*
  • Cost-Benefit Analysis
  • Electroporation
  • Gene Editing / methods*
  • Gene Transfer Techniques / instrumentation
  • Gene Transfer Techniques / trends
  • Humans
  • RNA, Guide, CRISPR-Cas Systems / genetics
  • Ribonucleoproteins / genetics
  • Ribonucleoproteins / metabolism*

Substances

  • RNA, Guide, CRISPR-Cas Systems
  • Ribonucleoproteins

Grants and funding

This work is supported by the Ministry of Science and Higher Education of the Russian Federation within the framework of a grant in the form of a subsidy for the creation and development of the «World-class Genomic Research Center for Ensuring Biological Safety and Technological Independence under the Federal Scientific and Technical Program for the Development of Genetic Technologies», agreement No. 075-15-2019-1666. The funders had and will not have a role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.