Reversible processes in collagen dehydration: A molecular dynamics study

Arch Biochem Biophys. 2021 Dec 15:714:109079. doi: 10.1016/j.abb.2021.109079. Epub 2021 Nov 6.

Abstract

Collagen dehydration is an unavoidable damaging process that causes the lack of fibers' physical properties and it is usually irreversible. However, the identification of low hydration conditions that permit a recovering of initial collagen features after a rehydration treatment is particularly of interest. Monitoring structural changes by means of MD simulations, we investigated the hydration-dehydration-rehydration cycle of two microfibril models built on different fragments of the sequence of rat tail collagen type I. The microfibrils have different hydropathic features, to investigate the influence of amino acid composition on the whole process. We showed that with low hydration at a level corresponding to the first shell, microfibril gains in compactness and tubularity. Crucially, some water molecules remain trapped inside the fibrils, allowing, by rehydrating, a recovery of the initial collagen structural features. Water rearranges in cluster around the protein, and its first layer is more anchored to the surface. However, these changes in distribution and mobility in low hydration conditions get back with rehydration.

Keywords: Collagen; Dehydration; Fibril; Molecular dynamics; Rehydration; Water hydration shell.

MeSH terms

  • Amino Acid Sequence
  • Collagen / chemistry*
  • Models, Molecular
  • Molecular Dynamics Simulation
  • Protein Conformation
  • Water / chemistry*

Substances

  • Water
  • Collagen