uORF-mediated riboregulation controls transcription of whiB7/wblC antibiotic resistance gene

Mol Microbiol. 2022 Jan;117(1):179-192. doi: 10.1111/mmi.14834. Epub 2021 Nov 2.

Abstract

WhiB7/WblC is a transcriptional factor of actinomycetes conferring intrinsic resistance to multiple translation-inhibitory antibiotics. It positively autoregulates its own transcription in response to the same antibiotics. The presence of a uORF and a potential Rho-independent transcription terminator in the 5' leader region has suggested a possibility that the whiB7/wblC gene is regulated via a uORF-mediated transcription attenuation. However, experimental evidence for the molecular mechanism to explain how antibiotic stress suppresses the attenuator, if any, and induces transcription of the whiB7/wblC gene has been lacking. Here we report that the 5' leader sequences of the whiB7/wblC genes in sub-clades of actinomycetes include conserved antiterminator RNA structures. We confirmed that the putative antiterminator in the whiB7/wblC leader sequences of both Streptomyces and Mycobacterium indeed suppresses Rho-independent transcription terminator and facilitates transcription readthrough, which is required for WhiB7/WblC-mediated antibiotic resistance. The antibiotic-mediated suppression of the attenuator can be recapitulated by amino acid starvation, indicating that translational inhibition of uORF by multiple signals is a key to induce whiB7/wblC expression. Our findings of a mechanism leading to intrinsic antibiotic resistance could provide an alternative to treat drug-resistant mycobacteria.

Keywords: Mycobacterium; Streptomyces; antibiotic resistance; antiterminator; transcription attenuation.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • 5' Untranslated Regions / genetics*
  • Actinobacteria / genetics*
  • Actinobacteria / physiology
  • Anti-Bacterial Agents / pharmacokinetics*
  • Anti-Bacterial Agents / pharmacology
  • Bacterial Proteins / genetics
  • Bacterial Proteins / metabolism*
  • Drug Resistance, Bacterial / genetics
  • Gene Expression Regulation, Bacterial*
  • Mycobacterium / genetics*
  • Mycobacterium / physiology
  • Ribosomes / metabolism
  • Streptomyces coelicolor / genetics*
  • Streptomyces coelicolor / physiology
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcription, Genetic

Substances

  • 5' Untranslated Regions
  • Anti-Bacterial Agents
  • Bacterial Proteins
  • Transcription Factors