Transcriptome-based identification and expression profiling of AP2/ERF members in Caragana intermedia and functional analysis of CiDREB3

Mol Biol Rep. 2021 Dec;48(12):7953-7965. doi: 10.1007/s11033-021-06826-8. Epub 2021 Oct 22.

Abstract

Background: The AP2/ERF transcription factor family plays important roles in regulation of plant growth and development as well as the response of plants to stress. However, there are currently few studies focusing on the function of the AP2/ERF-type transcription factors in Caragana intermedia Kuang et H. C. Fu. Here, the expression pattern of AP2/ERF transcription factors family in different tissues and under four stress treatments were evaluated, and the function of CiDREB3 was examined.

Methods and results: In this study, the genes encoding the AP2/ERF family of transcription factors were screened from the C. intermedia drought transcriptome database and subjected to bioinformatic analysis using the online tool and software. The expression pattern of the members of AP2/ERF transcription factors in C. intermedia were detected via quantitative real-time PCR (qRT-PCR). The function of CiDREB3 on growth, development and drought tolerance was evaluated by transgenic Arabidopsis. As a result, 22 sequences with complete ORFs were obtained and all sequences were divided into 13 sub-groups. Most of the AP2/ERF transcription factors exhibited tissue-specific expression and were induced by cold, heat, NaCl and mannitol treatments. Furthermore, heterologous expression of CiDREB3 altered the morphology of the transgenic Arabidopsis thaliana L. Heynh and improved its drought tolerance during seedlings development.

Conclusions: Taken together, the results of the present study helped to better understand the function of the AP2/ERF family transcription factors in response to multiple abiotic stresses and uncovered the role of CiDREB3 in affecting the morphology and abiotic stress tolerance of Arabidopsis.

Keywords: AP2/ERF; Abiotic stresses; Caragana intermedia; DREB3; Expression profiling; Transgenic Arabidopsis.

MeSH terms

  • Arabidopsis / genetics
  • Arabidopsis Proteins / genetics
  • Arabidopsis Proteins / metabolism
  • Caragana / genetics*
  • Caragana / metabolism
  • Caragana / physiology
  • DNA-Binding Proteins / genetics*
  • DNA-Binding Proteins / metabolism
  • Droughts
  • Evolution, Molecular
  • Gene Expression / genetics
  • Gene Expression Regulation, Plant / genetics
  • Genome, Plant / genetics
  • Phylogeny
  • Plant Proteins / genetics
  • Plants, Genetically Modified / genetics
  • Stress, Physiological / genetics
  • Transcription Factor AP-2 / genetics*
  • Transcription Factor AP-2 / metabolism
  • Transcription Factors / genetics
  • Transcription Factors / metabolism
  • Transcriptome / genetics

Substances

  • Arabidopsis Proteins
  • DNA-Binding Proteins
  • Plant Proteins
  • TINY2 protein, Arabidopsis
  • Transcription Factor AP-2
  • Transcription Factors