Point-of-care molecular diagnosis of Mycoplasma pneumoniae including macrolide sensitivity using quenching probe polymerase chain reaction

PLoS One. 2021 Oct 14;16(10):e0258694. doi: 10.1371/journal.pone.0258694. eCollection 2021.

Abstract

Objectives: Macrolides are generally considered to be the drugs of choice for treatment of patients with Mycoplasma pneumoniae infection. However, macrolide-resistant M. pneumoniae has been emerging since about 2000. The Smart Gene® system (MIZUHO MEDY Co., Ltd., Tosu, Japan) is a novel fully automated system for detection of pathogens using the method of quantitative polymerase chain reaction (qPCR) with QProbe (QProbe PCR). The entire procedure is completed within 50 min and the size of the instrument is small (15 x 34 x 30 cm). The purpose of this study was to evaluate the usefulness of the Smart Gene® system for detection of M. pneumoniae and detection of a point mutation at domain V of the 23S rRNA gene of M. pneumoniae.

Materials: Pharyngeal swab samples were collected from 154 patients who were suspected of having respiratory tract infections associated with M. pneumoniae.

Results: Compared with the results of qPCR, the sensitivity and specificity of the Smart Gene® system were 98.7% (78/79) and 100.0% (75/75), respectively. A point mutation at domain V of the 23S rRNA gene was detected from 7 (9.0%) of 78 M. pneumoniae-positive samples by the Smart Gene® system and these results were confirmed by direct sequencing. The minimum inhibitory concentrations of clarithromycin among the 5 isolates of M. pneumoniae with a point mutation at domain V of the 23S rRNA gene were >64 μg/ml and those among the 33 isolates without a mutation in the 23S rRNA gene were <0.0625 μg/ml.

Conclusion: The Smart Gene® system is a rapid and accurate assay for detection of the existence of M. pneumoniae and a point mutation at domain V of the 23S rRNA gene of M. pneumoniae at the same time. The Smart Gene® system is suitable for point-of-care testing in both hospital and outpatient settings.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Adolescent
  • Adult
  • Aged
  • Child
  • Child, Preschool
  • Clarithromycin / pharmacology*
  • DNA, Bacterial / genetics
  • DNA, Ribosomal / genetics
  • Female
  • Humans
  • Infant
  • Male
  • Microbial Sensitivity Tests
  • Microbial Viability / drug effects
  • Middle Aged
  • Mycoplasma pneumoniae / drug effects
  • Mycoplasma pneumoniae / genetics
  • Mycoplasma pneumoniae / isolation & purification*
  • Pharynx / microbiology
  • Pneumonia, Mycoplasma / diagnosis*
  • Point Mutation*
  • Point-of-Care Testing
  • RNA, Ribosomal, 23S / genetics*
  • Reagent Kits, Diagnostic
  • Real-Time Polymerase Chain Reaction
  • Sensitivity and Specificity
  • Young Adult

Substances

  • DNA, Bacterial
  • DNA, Ribosomal
  • RNA, Ribosomal, 23S
  • Reagent Kits, Diagnostic
  • Clarithromycin

Grants and funding

This research was funded in part by a Grant-in-Aid for Challenging Exploratory Research, 2018 -2020 (18K19659), from the Ministry of Education, Science, Sports and Culture of Japan. MIZUHO MEDY Co., Ltd provided grants for this study but was not involved in the design of the study or in enrollment of patients, data collection, analysis and interpretation, or preparation of the manuscript.