Multiplexed magnetic beads-assisted amperometric bioplatforms for global detection of methylations in nucleic acids

Anal Chim Acta. 2021 Oct 16:1182:338946. doi: 10.1016/j.aca.2021.338946. Epub 2021 Aug 12.

Abstract

This work reports the first electrochemical bioplatform developed for the multidetection of 5-methylcytosine (5-mC) and 5-hydroxymethylcytosine (5-hmC) in DNA, DNA N6-methyladenine (6mA) and RNA N6-methyladenosine (m6A) methylations at global level. Direct competitive immunoassays were implemented on the surface of magnetic beads (MBs) and optimized for the single amperometric determination of different targets varying in length, sequence and number of methylations on screen-printed carbon electrodes. After evaluating the sensitivity and selectivity of such determinations and the confirmation of no cross-reactivity, a multiplexed disposable platform allowing the simultaneous determination of the mentioned four methylation events in only 45 min has been prepared. The multiplexed bioplatform was successfully applied to the determination of m6A in cellular total RNA and of 5-mC, 5-hmC and 6mA in genomic DNA extracted from tissues. The developed bioplatform showed its usefulness to discriminate the aggressiveness of cancerous cells and between healthy and tumor tissues of colorectal cancer patients.

Keywords: 5-Hydroxymethylcytosine; 5-Methylcytosine; DNA N6-methyladenine; Electrochemical multiplexed bioplatforms; Global methylation; RNA N6-methyladenosine.

MeSH terms

  • Adenosine
  • Humans
  • Magnetic Phenomena
  • Methylation
  • Nucleic Acids*
  • RNA

Substances

  • Nucleic Acids
  • RNA
  • Adenosine