Spike detection for calcium activity

Int J Biostat. 2021 Sep 30;18(2):627-675. doi: 10.1515/ijb-2020-0043. eCollection 2022 Nov 1.

Abstract

We present in this paper a global methodology for the spike detection in a biological context of fluorescence recording of GnRH-neurons calcium activity. For this purpose we first propose a simple stochastic model that could mimic experimental time series by considering an autoregressive AR(1) process with a linear trend and specific innovations involving spiking times. Estimators of parameters with asymptotic normality are established and used to set up a statistical test on estimated innovations in order to detect spikes. We compare several procedures and illustrate on biological data the performance of our procedure.

Keywords: 62F03; 62F12; 62M10; Secondary: 92B25; autoregressive process; neuronal activity; peaks detection; time series.

MeSH terms

  • Action Potentials / physiology
  • Calcium*
  • Neurons* / physiology

Substances

  • Calcium