Bioisosteric Modification of To042: Synthesis and Evaluation of Promising Use-Dependent Inhibitors of Voltage-Gated Sodium Channels

ChemMedChem. 2021 Dec 6;16(23):3588-3599. doi: 10.1002/cmdc.202100496. Epub 2021 Oct 5.

Abstract

Three analogues of To042, a tocainide-related lead compound recently reported for the treatment of myotonia, were synthesized and evaluated in vitro as skeletal muscle sodium channel blockers possibly endowed with enhanced use-dependent behavior. Patch-clamp experiments on hNav1.4 expressed in HEK293 cells showed that N-[(naphthalen-1-yl)methyl]-4-[(2,6-dimethyl)phenoxy]butan-2-amine, the aryloxyalkyl bioisostere of To042, exerted a higher use-dependent block than To042 thus being able to preferentially block the channels in over-excited membranes while preserving healthy tissue function. It also showed the lowest active transport across BBB according to the results of P-glycoprotein (P-gp) interacting activity evaluation and the highest cytoprotective effect on HeLa cells. Quantum mechanical calculations and dockings gave insights on the most probable conformation of the aryloxyalkyl bioisostere of To042 in solution and the target residues involved in the binding, respectively. Both approaches indicated the conformations that might be adopted in both the unbound and bound state of the ligand. Overall, N-[(naphthalen-1-yl)methyl]-4-[(2,6-dimethyl)phenoxy]butan-2-amine exhibits an interesting toxico-pharmacological profile and deserves further investigation.

Keywords: bioisosteric replacement; drug discovery; mexiletine; molecular modeling; sodium channel blockers.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Antioxidants / chemical synthesis
  • Antioxidants / metabolism
  • Antioxidants / pharmacology
  • Antioxidants / toxicity
  • Butylamines / chemical synthesis
  • Butylamines / metabolism
  • Butylamines / pharmacology*
  • Butylamines / toxicity
  • HEK293 Cells
  • HeLa Cells
  • Humans
  • Mexiletine / pharmacology
  • Molecular Docking Simulation
  • NAV1.4 Voltage-Gated Sodium Channel / metabolism*
  • Phenyl Ethers / chemical synthesis
  • Phenyl Ethers / metabolism
  • Phenyl Ethers / pharmacology*
  • Phenyl Ethers / toxicity
  • Protein Binding
  • Reactive Oxygen Species / metabolism
  • Voltage-Gated Sodium Channel Blockers / chemical synthesis
  • Voltage-Gated Sodium Channel Blockers / metabolism
  • Voltage-Gated Sodium Channel Blockers / pharmacology*
  • Voltage-Gated Sodium Channel Blockers / toxicity

Substances

  • Antioxidants
  • Butylamines
  • NAV1.4 Voltage-Gated Sodium Channel
  • Phenyl Ethers
  • Reactive Oxygen Species
  • SCN4A protein, human
  • Voltage-Gated Sodium Channel Blockers
  • Mexiletine