HygY Is a Twitch Radical SAM Epimerase with Latent Dehydrogenase Activity Revealed upon Mutation of a Single Cysteine Residue

J Am Chem Soc. 2021 Sep 22;143(37):15152-15158. doi: 10.1021/jacs.1c05727. Epub 2021 Sep 7.

Abstract

HygY is a SPASM/twitch radical SAM enzyme hypothesized to catalyze the C2'-epimerization of galacamine during the biosynthesis of hygromycin B. This activity is confirmed via biochemical and structural analysis of the derivatized reaction products using chemically synthesized deuterated substrate, high-resolution mass spectrometry and 1H NMR. Electron paramagnetic resonance spectroscopy of the reduced enzyme is consistent with ligation of two [Fe4S4] clusters characteristic of the twitch radical SAM subgroup. HygY catalyzed epimerization proceeds with incorporation of a single solvent Hydron into the talamine product facilitated by the catalytic cysteine-183 residue. Mutation of this cysteine to alanine converts HygY from a C2'-epimerase to an C2'-dehydrogenase with comparable activity. The SPASM/twitch radical SAM enzymes often serve as anaerobic oxidases making the redox-neutral epimerases in this class rather interesting. The discovery of latent dehydrogenase activity in a twitch epimerase may therefore offer new insights into the mechanistic features that distinguish oxidative versus redox-neutral SPASM/twitch enzymes and lead to the evolution of new enzyme activities.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Substitution
  • Bacterial Proteins
  • Electron Spin Resonance Spectroscopy
  • Gene Expression Regulation, Bacterial
  • Gene Expression Regulation, Enzymologic
  • Hygromycin B / metabolism*
  • Mutation
  • Oxidation-Reduction
  • Oxidoreductases / metabolism*
  • Racemases and Epimerases / genetics
  • Racemases and Epimerases / metabolism*
  • Streptomyces / metabolism*

Substances

  • Bacterial Proteins
  • Hygromycin B
  • Oxidoreductases
  • Racemases and Epimerases

Supplementary concepts

  • Streptomyces hygroscopicus