Prognostic Signature of Osteosarcoma Based on 14 Autophagy-Related Genes

Pathol Oncol Res. 2021 Jul 16:27:1609782. doi: 10.3389/pore.2021.1609782. eCollection 2021.

Abstract

Background: Osteosarcoma is a common malignancy of bone with inferior survival outcome. Autophagy can exert multifactorial influence on tumorigenesis and tumor progression. However, the specific function of genes related to autophagy in the prognosis of osteosarcoma patients remains unclear. Herein, we aimed to explore the association of genes related to autophagy with the survival outcome of osteosarcoma patients. Methods: The autophagy-associated genes that were related to the prognosis of osteosarcoma were optimized by LASSO Cox regression analysis. The survival of osteosarcoma patients was forecasted by multivariate Cox regression analysis. The immune infiltration status of 22 immune cell types in osteosarcoma patients with high and low risk scores was compared by using the CIBERSORT tool. Results: The risk score model constructed according to 14 autophagy-related genes (ATG4A, BAK1, BNIP3, CALCOCO2, CCL2, DAPK1, EGFR, FAS, GRID2, ITGA3, MYC, RAB33B, USP10, and WIPI1) could effectively predict the prognosis of patients with osteosarcoma. A nomogram model was established based on risk score and metastasis. Conclusion: Autophagy-related genes were identified as pivotal prognostic signatures, which could guide the clinical decision making in the treatment of osteosarcoma.

Keywords: autophagy-related genes; nomogram; osteosarcoma; prognosis; risk score.

MeSH terms

  • Adolescent
  • Autophagy-Related Proteins / genetics
  • Autophagy-Related Proteins / metabolism*
  • Biomarkers, Tumor / genetics
  • Biomarkers, Tumor / metabolism*
  • Bone Neoplasms / genetics
  • Bone Neoplasms / mortality*
  • Bone Neoplasms / pathology
  • Female
  • Follow-Up Studies
  • Gene Expression Profiling
  • Gene Expression Regulation, Neoplastic*
  • Humans
  • Male
  • Nomograms*
  • Osteosarcoma / genetics
  • Osteosarcoma / mortality*
  • Osteosarcoma / pathology
  • Prognosis
  • Risk Factors
  • Survival Rate
  • Transcriptome*

Substances

  • Autophagy-Related Proteins
  • Biomarkers, Tumor