IFITM proteins promote SARS-CoV-2 infection and are targets for virus inhibition in vitro

Nat Commun. 2021 Jul 28;12(1):4584. doi: 10.1038/s41467-021-24817-y.

Abstract

Interferon-induced transmembrane proteins (IFITMs 1, 2 and 3) can restrict viral pathogens, but pro- and anti-viral activities have been reported for coronaviruses. Here, we show that artificial overexpression of IFITMs blocks SARS-CoV-2 infection. However, endogenous IFITM expression supports efficient infection of SARS-CoV-2 in human lung cells. Our results indicate that the SARS-CoV-2 Spike protein interacts with IFITMs and hijacks them for efficient viral infection. IFITM proteins were expressed and further induced by interferons in human lung, gut, heart and brain cells. IFITM-derived peptides and targeting antibodies inhibit SARS-CoV-2 entry and replication in human lung cells, cardiomyocytes and gut organoids. Our results show that IFITM proteins are cofactors for efficient SARS-CoV-2 infection of human cell types representing in vivo targets for viral transmission, dissemination and pathogenesis and are potential targets for therapeutic approaches.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Angiotensin-Converting Enzyme 2 / antagonists & inhibitors
  • Angiotensin-Converting Enzyme 2 / genetics*
  • Angiotensin-Converting Enzyme 2 / metabolism
  • Antibodies, Neutralizing / pharmacology
  • Antigens, Differentiation / genetics*
  • Antigens, Differentiation / metabolism
  • Binding Sites
  • COVID-19 / virology
  • Gene Expression Regulation
  • Host-Pathogen Interactions / drug effects
  • Host-Pathogen Interactions / genetics
  • Humans
  • Interferon-beta / pharmacology
  • Membrane Proteins / antagonists & inhibitors
  • Membrane Proteins / genetics*
  • Membrane Proteins / metabolism
  • Protein Binding
  • Protein Interaction Domains and Motifs
  • RNA, Small Interfering / genetics
  • RNA, Small Interfering / metabolism
  • RNA-Binding Proteins / antagonists & inhibitors
  • RNA-Binding Proteins / genetics*
  • RNA-Binding Proteins / metabolism
  • SARS-CoV-2 / drug effects
  • SARS-CoV-2 / genetics*
  • SARS-CoV-2 / metabolism
  • Sequence Alignment
  • Sequence Homology, Amino Acid
  • Spike Glycoprotein, Coronavirus / genetics*
  • Spike Glycoprotein, Coronavirus / metabolism
  • Virus Attachment / drug effects

Substances

  • Antibodies, Neutralizing
  • Antigens, Differentiation
  • IFITM2 protein, human
  • IFITM3 protein, human
  • Membrane Proteins
  • RNA, Small Interfering
  • RNA-Binding Proteins
  • Spike Glycoprotein, Coronavirus
  • leu-13 antigen
  • spike protein, SARS-CoV-2
  • Interferon-beta
  • ACE2 protein, human
  • Angiotensin-Converting Enzyme 2