Spontaneous and Targeted Mutations in the Decapping Enzyme Enhance Replication of Modified Vaccinia Virus Ankara (MVA) in Monkey Cells

J Virol. 2021 Sep 9;95(19):e0110421. doi: 10.1128/JVI.01104-21. Epub 2021 Sep 9.

Abstract

Modified vaccinia virus Ankara (MVA) was derived by repeated passaging in chick fibroblasts, during which deletions and mutations rendered the virus unable to replicate in most mammalian cells. Marker rescue experiments demonstrated that the host range defect could be overcome by replacing DNA that had been deleted from near the left end of the genome. One virus isolate, however, recovered the ability to replicate in monkey BS-C-1 cells but not human cells without added DNA, suggesting that it arose from a spontaneous mutation. Here, we showed that variants with enhanced ability to replicate in BS-C-1 cells could be isolated by blind passaging of MVA and that in each there was a point mutation leading to an amino acid substitution in the D10 decapping enzyme. The sufficiency of these single mutations to enhance host range was confirmed by constructing recombinant viruses. The D10 mutations occurred at N- or C-terminal locations distal to the active site, suggesting an indirect effect on decapping or on another previously unknown role of D10. Although increased amounts of viral mRNA and proteins were found in BS-C-1 cells infected with the mutants compared to those with parental MVA, the increases were much less than the 1- to 2-log-higher virus yields. Nevertheless, a contributing role for diminished decapping in overcoming the host range defect was consistent with increased replication and viral protein synthesis in BS-C-1 cells infected with an MVA engineered to have active-site mutations that abrogate decapping activity entirely. Optimal decapping may vary depending on the biological context. IMPORTANCE Modified vaccinia virus Ankara (MVA) is an attenuated virus that is approved as a smallpox vaccine and is in clinical trials as a vector for other pathogens. The safety of MVA is due in large part to its inability to replicate in mammalian cells. Although host range restriction is considered a stable feature of the virus, we describe the occurrence of spontaneous mutations in MVA that increase replication considerably in monkey BS-C-1 cells but only slightly in human cells. The mutants contain single nucleotide changes that lead to amino acid substitutions in one of the two decapping enzymes. Although the spontaneous mutations are distant from the decapping enzyme active site, engineered active-site mutations also increased virus replication in BS-C-1 cells. The effects of these mutations on the immunogenicity of MVA vectors remain to be determined.

Keywords: MVA; adaptive mutations; attenuated vaccine; mRNA decapping; poxvirus; vaccinia virus; virus host range; virus-host interactions.

Publication types

  • Research Support, N.I.H., Intramural

MeSH terms

  • Animals
  • Catalytic Domain
  • Cell Line
  • Chick Embryo
  • Chlorocebus aethiops
  • Homologous Recombination
  • Host Specificity
  • Humans
  • Nucleotidases / chemistry
  • Nucleotidases / genetics*
  • Nucleotidases / metabolism*
  • Open Reading Frames
  • Point Mutation
  • RNA, Messenger / metabolism
  • RNA, Viral / metabolism
  • Sequence Deletion
  • Vaccinia virus / genetics
  • Vaccinia virus / physiology*
  • Viral Plaque Assay
  • Viral Proteins / chemistry
  • Viral Proteins / genetics*
  • Viral Proteins / metabolism*
  • Virus Replication

Substances

  • RNA, Messenger
  • RNA, Viral
  • Viral Proteins
  • D10 protein, vaccinia virus
  • Nucleotidases