AgDD System: A Chemical Controllable Protein Aggregates in Cells

Methods Mol Biol. 2021:2312:277-285. doi: 10.1007/978-1-0716-1441-9_16.

Abstract

There are increasing evidence and growing interest in the relationship between protein aggregates/phase separation and various human diseases, especially neurodegenerative diseases. However, we do not entirely comprehend how aggregates generate or the clearance network of chaperones, proteasomes, ubiquitin ligases, and other factors interact with aggregates. Here, we describe chemically controllable systems compose with a genetically engineered cell and a small drug that enables us to rapidly induce protein aggregates' formation by withdrawing the small molecule. This trigger does not activate global stress responses induced by stimuli, such as proteasome inhibitors or heat shock. This method can produce aggregates in a specific compartment and diverse experimental systems, including live animals.

Keywords: Chaperones; Chemical biology; Destabilizing domain; Phase separation; Proteasome; Protein aggregates.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Cell Culture Techniques
  • Cell Engineering*
  • Gene Expression Regulation / drug effects*
  • Green Fluorescent Proteins / genetics
  • Green Fluorescent Proteins / metabolism
  • HEK293 Cells
  • Humans
  • Mice
  • Microscopy, Fluorescence
  • Mutation
  • NIH 3T3 Cells
  • Protein Aggregates
  • Protein Engineering*
  • Protein Stability
  • Proteostasis
  • Recombinant Fusion Proteins / genetics
  • Recombinant Fusion Proteins / metabolism
  • Tacrolimus Binding Proteins / genetics*
  • Tacrolimus Binding Proteins / metabolism
  • Transfection

Substances

  • Protein Aggregates
  • Recombinant Fusion Proteins
  • Green Fluorescent Proteins
  • Tacrolimus Binding Proteins