Selective monitoring of the protein-free ADP-ribose released by ADP-ribosylation reversal enzymes

PLoS One. 2021 Jun 30;16(6):e0254022. doi: 10.1371/journal.pone.0254022. eCollection 2021.

Abstract

ADP-ribosylation is a key post-translational modification that regulates a wide variety of cellular stress responses. The ADP-ribosylation cycle is maintained by writers and erasers. For example, poly(ADP-ribosyl)ation cycles consist of two predominant enzymes, poly(ADP-ribose) polymerases (PARPs) and poly(ADP-ribose) glycohydrolase (PARG). However, historically, mechanisms of erasers of ADP-ribosylations have been understudied, primarily due to the lack of quantitative tools to selectively monitor specific activities of different ADP-ribosylation reversal enzymes. Here, we developed a new NUDT5-coupled AMP-Glo (NCAG) assay to specifically monitor the protein-free ADP-ribose released by ADP-ribosylation reversal enzymes. We found that NUDT5 selectively cleaves protein-free ADP-ribose, but not protein-bound poly- and mono-ADP-ribosylations, protein-free poly(ADP-ribose) chains, or NAD+. As a proof-of-concept, we successfully measured the kinetic parameters for the exo-glycohydrolase activity of PARG, which releases monomeric ADP-ribose, and monitored activities of site-specific mono-ADP-ribosyl-acceptor hydrolases, such as ARH3 and TARG1. This NCAG assay can be used as a general platform to study the mechanisms of diverse ADP-ribosylation reversal enzymes that release protein-free ADP-ribose as a product. Furthermore, this assay provides a useful tool to identify small-molecule probes targeting ADP-ribosylation metabolism and to quantify ADP-ribose concentrations in cells.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • ADP-Ribosylation*
  • Adenosine Diphosphate Ribose / metabolism*
  • Amino Acids / metabolism
  • Enzymes / metabolism*
  • Glycoside Hydrolases / metabolism
  • Humans
  • Hydrolases / metabolism
  • Kinetics
  • Pyrophosphatases / metabolism

Substances

  • Amino Acids
  • Enzymes
  • Adenosine Diphosphate Ribose
  • Hydrolases
  • Glycoside Hydrolases
  • poly ADP-ribose glycohydrolase
  • NUDT5 protein, human
  • Pyrophosphatases