Extraction and electrochemical detection for quantification of trace-level DNA

Mikrochim Acta. 2021 May 5;188(6):180. doi: 10.1007/s00604-021-04825-x.

Abstract

A novel strategy was developed to extract, detect, and quantify trace-level DNA. For the extraction step, a composite of methylene blue (MB), poly(acrylic acid) (PAA), and modified iron oxide magnetic nanoparticles (IOMNPs) (PAA/IOMNPs) was used to adsorb DNA from the sample. MB-PAA/IOMNPs with adsorbed DNA were then separated from the solution with an external magnet and MB-DNA was eluted from PAA/IOMNPs with acetic acid. In the detection step, MB-DNA was adsorbed on the surface of 3-aminopropyltriethoxysilane (APTES)-modified glassy carbon electrode via electrostatic force. DNA was quantified by measuring the oxidation peak of MB at a potential -0.13 V vs. Ag/AgCl using differential pulse voltammetry. Under the optimal experimental conditions, the DNA sensor showed linear ranges from 0.001 to 0.005 pg μL-1, 0.005 to 0.070 pg μL-1, and 0.070 to 0.400 pg μL-1 and a limit of detection of 0.87 fg μL-1. The proposed sensor detected trace DNA in real samples with recoveries that ranged from 80.4 to 90.4%.

Keywords: 3-aminopropyltriethoxysilane-modified electrode; Differential pulse voltammetry; Electrochemical sensor; Iron oxide magnetic nanoparticles; Methylene blue; Trace DNA.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Acrylic Resins / chemistry
  • Adsorption
  • Chemical Fractionation / methods*
  • DNA / analysis*
  • DNA / chemistry
  • DNA / isolation & purification
  • Electrochemical Techniques / instrumentation
  • Electrochemical Techniques / methods*
  • Electrodes
  • Humans
  • Limit of Detection
  • Magnetic Iron Oxide Nanoparticles / chemistry
  • Methylene Blue / chemistry
  • Mouth Mucosa / chemistry
  • Propylamines / chemistry
  • Reproducibility of Results
  • Silanes / chemistry

Substances

  • Acrylic Resins
  • Propylamines
  • Silanes
  • carbopol 940
  • DNA
  • amino-propyl-triethoxysilane
  • Methylene Blue