Permeant fluorescent probes visualize the activation of SARM1 and uncover an anti-neurodegenerative drug candidate

Elife. 2021 May 4:10:e67381. doi: 10.7554/eLife.67381.

Abstract

SARM1 regulates axonal degeneration through its NAD-metabolizing activity and is a drug target for neurodegenerative disorders. We designed and synthesized fluorescent conjugates of styryl derivative with pyridine to serve as substrates of SARM1, which exhibited large red shifts after conversion. With the conjugates, SARM1 activation was visualized in live cells following elevation of endogenous NMN or treatment with a cell-permeant NMN-analog. In neurons, imaging documented mouse SARM1 activation preceded vincristine-induced axonal degeneration by hours. Library screening identified a derivative of nisoldipine (NSDP) as a covalent inhibitor of SARM1 that reacted with the cysteines, especially Cys311 in its ARM domain and blocked its NMN-activation, protecting axons from degeneration. The Cryo-EM structure showed that SARM1 was locked into an inactive conformation by the inhibitor, uncovering a potential neuroprotective mechanism of dihydropyridines.

Keywords: ADP-ribosyl cyclase; CD38; CryoEM structure; NAADP; NAD; SARM1; allosteric inhibitors; base-exchange; biochemistry; cADPR; cell biology; chemical biology; covalent inhibitors; cyclic ADP-ribose; dHNN; fluorescent probes; human; mouse; nisoldipine.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Armadillo Domain Proteins / antagonists & inhibitors
  • Armadillo Domain Proteins / chemistry*
  • Armadillo Domain Proteins / genetics
  • Armadillo Domain Proteins / metabolism*
  • Cryoelectron Microscopy
  • Cytoskeletal Proteins / antagonists & inhibitors
  • Cytoskeletal Proteins / chemistry*
  • Cytoskeletal Proteins / genetics
  • Cytoskeletal Proteins / metabolism*
  • Dihydropyridines / therapeutic use
  • Drug Evaluation, Preclinical / methods*
  • Fluorescent Dyes*
  • HEK293 Cells
  • Humans
  • Mice
  • Mice, Inbred C57BL
  • Neurons / physiology
  • Neuroprotection / drug effects*
  • Pharmaceutical Preparations

Substances

  • Armadillo Domain Proteins
  • Cytoskeletal Proteins
  • Dihydropyridines
  • Fluorescent Dyes
  • Pharmaceutical Preparations
  • SARM1 protein, mouse
  • 1,4-dihydropyridine

Grants and funding

The funders had no role in study design, data collection and interpretation, or the decision to submit the work for publication.