The chromatin accessibility landscape reveals distinct transcriptional regulation in the induction of human primordial germ cell-like cells from pluripotent stem cells

Stem Cell Reports. 2021 May 11;16(5):1245-1261. doi: 10.1016/j.stemcr.2021.03.032. Epub 2021 Apr 29.

Abstract

In vitro induction of human primordial germ cell-like cells (hPGCLCs) provides an ideal platform to recapitulate hPGC development. However, the detailed molecular mechanisms regulating the induction of hPGCLCs remain largely uncharacterized. Here, we profiled the chromatin accessibility and transcriptome dynamics throughout the process of hPGCLC induction. Genetic ablation of SOX15 indicated the crucial roles of SOX15 in the maintenance of hPGCLCs. Mechanistically, SOX15 exerted its roles via suppressing somatic gene expression and sustaining latent pluripotency. Notably, ETV5, a downstream regulator of SOX15, was also uncovered to be essential for hPGCLC maintenance. Finally, a stepwise switch of OCT4/SOX2, OCT4/SOX17, and OCT4/SOX15 binding motifs were found to be enriched in closed-to-open regions of human embryonic stem cells, and early- and late-stage hPGCLCs, respectively. Collectively, our data characterized the chromatin accessibility and transcriptome landscapes throughout hPGCLC induction and defined the SOX15-mediated regulatory networks underlying this process.

Keywords: ETV5; SOX15; chromatin accessibility; germ cell; human primordial germ cell-like cells.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Base Sequence
  • Cell Lineage / genetics
  • Chromatin / metabolism*
  • Gene Expression Regulation, Developmental*
  • Germ Cells / cytology
  • Germ Cells / metabolism*
  • Human Embryonic Stem Cells / cytology
  • Human Embryonic Stem Cells / metabolism
  • Humans
  • Octamer Transcription Factor-3 / metabolism
  • Pluripotent Stem Cells / cytology
  • Pluripotent Stem Cells / metabolism*
  • Regulatory Sequences, Nucleic Acid / genetics
  • SOX Transcription Factors / metabolism
  • Transcription Factor AP-2 / metabolism
  • Transcription, Genetic*

Substances

  • Chromatin
  • Octamer Transcription Factor-3
  • SOX Transcription Factors
  • SOX15 protein, human
  • TFAP2C protein, human
  • Transcription Factor AP-2