Microsatellite DNA Analysis for Diversity Study, Individual Identification and Parentage Control in Pig Breeds in Poland

Genes (Basel). 2021 Apr 19;12(4):595. doi: 10.3390/genes12040595.

Abstract

Swine DNA profiling is of high importance for animal identification and parentage verification. The aim of this study was to test a set of 14 microsatellite (STR) markers recommended by ISAG for parentage verification in Polish Landrace (PL, n = 900), Polish Large White (PLW, n = 482), Pulawska (PUL, n = 127), and Duroc pigs (DU n = 108). The studied breeds showed a medium level of genetic differentiation. The average value of heterozygosity and degree of polymorphism (PIC) were above 0.5 for the studied breeds, except for the DU breed (PIC = 0.477). The population inbreeding coefficient indicates an absence of inbreeding in the studied breeds (an average value of FIS = 0.007). The cumulative power of discrimination for all breeds reached high values close to 1.0, while the probability of identity (PID) was low, with PID values ranging between 10-9 (for DU) and 10-12 (for PLW). The cumulative exclusion probability for PE1 and PE2 showed that the parentage can be confirmed with a probability of from 92.75% to 99.01% and from 99.49% to 99.97%, respectively.

Keywords: STR; biodiversity; individual identification; parentage; pig.

MeSH terms

  • Animals
  • Breeding / methods*
  • Female
  • Genetic Markers
  • Genotyping Techniques / veterinary*
  • Male
  • Microsatellite Repeats*
  • Paternity*
  • Poland
  • Polymorphism, Single Nucleotide*
  • Sequence Analysis, DNA / methods*
  • Swine / classification*
  • Swine / genetics

Substances

  • Genetic Markers