Characterization of the ERP gene family in Arabidopsis thaliana

Plant Signal Behav. 2021 Jun 3;16(6):1913301. doi: 10.1080/15592324.2021.1913301. Epub 2021 Apr 27.

Abstract

Plant genomes encode numerous proteins with obscure features (POFs) that lack recognized domains or motifs. However, there is little functional information for POFs even in Arabidopsis because biochemical, physiological, and genetic assay are required for the functional annotations of POFs. Here, we identified a small gene family, the endoplasmic reticulum-localized POF (ERP) family, in Arabidopsis. Phylogenetic analysis revealed that the number of ERP family members was conserved in the plant kingdom, suggesting strong selective pressure was imposed on ERP family during plant evolution. No recognizable domains were identified in the predicted ERP proteins, except for the N-terminal signal peptide. ERPs were found to be widely expressed during Arabidopsis development and showed endoplasmic reticulum localization. It was reported that ERP1 is an inositol-1,4,5-trisphosphate 5-phosphatase (5PTase), but ERP1 could not substitute for At5PTase12 in precocious pollen germination, indicating that ERP1 did not have the similar functions as At5PTase12 in inositol 1,4,5-trisphosphate [Ins(1,4,5)P3] metabolism. Further studies are needed to dissect the functions of ERP family proteins in Arabidopsis development.

Keywords: Arabidopsis; ERP; POF; endoplasmic reticulum; inositol 1,4,5-trisphosphate metabolism.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Arabidopsis / genetics*
  • Arabidopsis / growth & development*
  • Arabidopsis Proteins / genetics*
  • Endoplasmic Reticulum*
  • Evolution, Molecular*
  • Gene Expression Regulation, Plant
  • Genes, Plant*
  • Genome, Plant
  • Phylogeny*

Substances

  • Arabidopsis Proteins

Grants and funding

This study has been supported by National Natural Science Foundation of China (31770349).