A Deep Learning Radiomics Model to Identify Poor Outcome in COVID-19 Patients With Underlying Health Conditions: A Multicenter Study

IEEE J Biomed Health Inform. 2021 Jul;25(7):2353-2362. doi: 10.1109/JBHI.2021.3076086. Epub 2021 Jul 27.

Abstract

Objective: Coronavirus disease 2019 (COVID-19) has caused considerable morbidity and mortality, especially in patients with underlying health conditions. A precise prognostic tool to identify poor outcomes among such cases is desperately needed.

Methods: Total 400 COVID-19 patients with underlying health conditions were retrospectively recruited from 4 centers, including 54 dead cases (labeled as poor outcomes) and 346 patients discharged or hospitalized for at least 7 days since initial CT scan. Patients were allocated to a training set (n = 271), a test set (n = 68), and an external test set (n = 61). We proposed an initial CT-derived hybrid model by combining a 3D-ResNet10 based deep learning model and a quantitative 3D radiomics model to predict the probability of COVID-19 patients reaching poor outcome. The model performance was assessed by area under the receiver operating characteristic curve (AUC), survival analysis, and subgroup analysis.

Results: The hybrid model achieved AUCs of 0.876 (95% confidence interval: 0.752-0.999) and 0.864 (0.766-0.962) in test and external test sets, outperforming other models. The survival analysis verified the hybrid model as a significant risk factor for mortality (hazard ratio, 2.049 [1.462-2.871], P < 0.001) that could well stratify patients into high-risk and low-risk of reaching poor outcomes (P < 0.001).

Conclusion: The hybrid model that combined deep learning and radiomics could accurately identify poor outcomes in COVID-19 patients with underlying health conditions from initial CT scans. The great risk stratification ability could help alert risk of death and allow for timely surveillance plans.

Publication types

  • Multicenter Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Aged
  • Aged, 80 and over
  • COVID-19* / diagnostic imaging
  • COVID-19* / mortality
  • Comorbidity
  • Deep Learning*
  • Female
  • Humans
  • Imaging, Three-Dimensional
  • Lung / diagnostic imaging
  • Male
  • Middle Aged
  • Prognosis
  • ROC Curve
  • Radiographic Image Interpretation, Computer-Assisted / methods*
  • Retrospective Studies
  • SARS-CoV-2
  • Tomography, X-Ray Computed / methods*

Grants and funding

This work was supported in part by the National Key R&D Program of China under Grants 2017YFC1309100 and 2017YFA0205200, in part by the National Natural Science Foundation of China under Grants 82022036, 91959130, 81971776, 81771924, 81930053, and 81527805, in part by Beijing Natural Science Foundation (L182061), in part by the Strategic Priority Research Program of Chinese Academy of Sciences under Grant XDB 38040200, in part by the Chinese Academy of Sciences under Grants GJJSTD20170004 and QYZDJ-SSW-JSC005, and in part by the Youth Innovation Promotion Association CAS 2017175.