Characteristics of Gd(III) spin labels for the study of protein conformations

Methods Enzymol. 2021:651:235-290. doi: 10.1016/bs.mie.2021.01.040. Epub 2021 Mar 26.

Abstract

Gd(III) complexes are currently established as spin labels for structural studies of biomolecules using pulse dipolar electron paramagnetic resonance (PD-EPR) techniques. This has been achieved by the availability of medium- and high-field spectrometers, understanding the spin physics underlying the spectroscopic properties of high spin Gd(III) (S=7/2) pairs and their dipolar interaction, the design of well-defined model compounds and optimization of measurement techniques. In addition, a variety of Gd(III) chelates and labeling schemes have allowed a broad scope of applications. In this review, we provide a brief background of the spectroscopic properties of Gd(III) pertinent for effective PD-EPR measurements and focus on the various labels available to date. We report on their use in PD-EPR applications and highlight their pros and cons for particular applications. We also devote a section to recent in-cell structural studies of proteins using Gd(III), which is an exciting new direction for Gd(III) spin labeling.

Keywords: Distance measurements; Gd(III) labeling; In-cell DEER; Protein conformation; Pulse dipolar EPR.

Publication types

  • Research Support, Non-U.S. Gov't
  • Review

MeSH terms

  • Electron Spin Resonance Spectroscopy
  • Gadolinium*
  • Protein Conformation
  • Proteins*
  • Spin Labels

Substances

  • Proteins
  • Spin Labels
  • Gadolinium