The complete chloroplast genome sequence of Oryza sativa Temperate japonica

Qi Feng; Wei-Cai Song; Yun-Jiao Zhang; Chao Shi

doi:10.1080/23802359.2021.1888331

The complete chloroplast genome sequence of Oryza sativa Temperate japonica

Mitochondrial DNA B Resour. 2021 Mar 16;6(3):927-928. doi: 10.1080/23802359.2021.1888331.

Authors

Qi Feng¹, Wei-Cai Song¹, Yun-Jiao Zhang², Chao Shi^{1

3}

Affiliations

¹ College of Marine Science and Biological Engineering, Qingdao University of Science and Technology, Qingdao, China.
² Kunming Medical University Haiyuan College, Kunming, China.
³ Plant Germplasm and Genomics Center, Germplasm Bank of Wild Species in Southwest China, Kunming Institute of Botany, The Chinese Academy of Sciences, Kunming, China.

Abstract

In this study, the complete chloroplast genome of O. sativa Temperate Japonica YunJing-24 was assembled using Illumina sequencing data. The complete chloroplast (cp) genome is 134,556 bp in length, including a pair of invert repeats (IRA and IRB) regions of 20,797 bp, large single-copy (LSC) region of 80,615 bp, and small single-copy (SSC) region of 12,347 bp. A total of 129 genes were predicted in the genome, including 87 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. Phylogenetic analysis confirmed the phylogenetic relationship between O. sativa Temperate Japonica and other representative species.

Keywords: Oryza sativa; Poaceae; Temperate japonica; chloroplast genome.

Grants and funding

This work was supported by the National Natural Science Foundation of China [No. 31701090].