Structural and molecular perspectives of SARS-CoV-2

Methods. 2021 Nov:195:23-28. doi: 10.1016/j.ymeth.2021.03.007. Epub 2021 Mar 15.

Abstract

Recent emergence of Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) transpired into pandemic coronavirus disease 2019 (COVID-19). SARS-CoV-2 has been rapidly transmitted across the globe within a short period of time, with more than 106 million cases and 2.3 million deaths. The continuous rise in worldwide cases of COVID-19, transmission dynamics of SARS-CoV-2 including re-infections and enormous case-fatality rates emphasizes the urgent need of potential preventive and therapeutic measures. The development of effective therapeutic and preventive measures relies on understanding the molecular and cellular mechanism of replication exhibited by SARS-CoV-2. The structure of SARS-CoV-2 is ranging from 90-120 nm that comprises surface viral proteins including spike, envelope, membrane which are attached in host lipid bilayer containing the helical nucleocapsid comprising viral RNA. Spike (S) glycoprotein initiates the attachment of SARS-CoV-2 with a widely expressed cellular receptor angiotensin-converting enzyme 2 (ACE2), and subsequent S glycoprotein priming via serine protease TMPRSS2. Prominently, comprehensive analysis of structural insights into the crucial SARS-CoV-2 proteins may lead us to design effective therapeutics molecules. The present article, emphasizes the molecular and structural perspective of SARS-CoV-2 including mechanistic insights in its replication.

Keywords: ACE2; COVID-19; Mpro; Nucleocapsid; SARS-CoV-2; Spike-glycoprotein; nsp10/nsp16 2′-O-methylase.

Publication types

  • Review

MeSH terms

  • Animals
  • Binding Sites / physiology
  • COVID-19 / epidemiology
  • COVID-19 / metabolism
  • Humans
  • Protein Structure, Secondary
  • SARS-CoV-2 / chemistry*
  • SARS-CoV-2 / metabolism*
  • Spike Glycoprotein, Coronavirus / chemistry*
  • Spike Glycoprotein, Coronavirus / metabolism*
  • Virus Internalization
  • Virus Replication / physiology*

Substances

  • Spike Glycoprotein, Coronavirus
  • spike protein, SARS-CoV-2