Characterization of a complex phenotype (fever-dependent recurrent acute liver failure and osteogenesis imperfecta) due to NBAS and P4HB variants

Mol Genet Metab. 2021 Jun;133(2):201-210. doi: 10.1016/j.ymgme.2021.02.007. Epub 2021 Feb 27.

Abstract

We report the clinical, biochemical and genetic findings from a Spanish boy of Caucasian origin who presented with fever-dependent RALF (recurrent acute liver failure) and osteogenesis imperfecta (OI). Whole-exome sequencing (WES) uncovered two compound heterozygous variants in NBAS (c.[1265 T > C];[1549C > T]:p.[(Leu422Pro)];[(Arg517Cys)]), and a heterozygous variant in P4HB (c.[194A > G];[194=]:p.[(Lys65Arg)];[(Lys65=)]) that was transmitted from the clinically unaffected mother who was mosaic carrier of the variant. Variants in NBAS protein have been associated with ILFS2 (infantile liver failure syndrome-2), SOPH syndrome (short stature, optic nerve atrophy, and Pelger-Huët anomaly syndrome), and multisystem diseases. Several patients showed clinical manifestations affecting the skeletal system, such as osteoporosis, pathologic fractures and OI. Experiments in the patient's fibroblasts demonstrated that mutated NBAS protein is overexpressed and thermally unstable, and reduces the expression of MGP, a regulator of bone homeostasis. Variant in PDI (protein encoded by P4HB) has been associated with CLCRP1 (Cole-Carpenter syndrome-1), a type of severe OI. An increase of COL1A2 protein retention was observed in the patient's fibroblasts. In order to study if the variant in P4HB was involved in the alteration in collagen trafficking, overexpression experiments of PDI were carried out. These experiments showed that overexpression of mutated PDI protein produces an increase in COL1A2 retention. In conclusion, these results corroborate that the variants in NBAS are responsible for the liver phenotype, and demonstrate that the variant in P4HB is involved in the bone phenotype, probably in synergy with NBAS variants.

Keywords: COL1A2; Cole-Carpenter syndrome 1 (CLCRP1); Infantile liver failure syndrome 2 (ILFS2); NBAS; P4HB; WES.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Child
  • Child, Preschool
  • Collagen Type I / genetics*
  • Craniosynostoses / complications
  • Craniosynostoses / genetics
  • Craniosynostoses / pathology
  • Dwarfism / diagnostic imaging
  • Dwarfism / genetics
  • Dwarfism / pathology
  • Exome Sequencing
  • Eye Abnormalities / complications
  • Eye Abnormalities / genetics
  • Eye Abnormalities / pathology
  • Fever / complications
  • Fever / genetics
  • Heterozygote
  • Humans
  • Hydrocephalus / complications
  • Hydrocephalus / genetics
  • Hydrocephalus / pathology
  • Infant
  • Infant, Newborn
  • Liver / diagnostic imaging
  • Liver / pathology
  • Liver Failure, Acute / complications
  • Liver Failure, Acute / diagnostic imaging
  • Liver Failure, Acute / genetics*
  • Liver Failure, Acute / pathology
  • Male
  • Mutation / genetics
  • Neoplasm Proteins / genetics*
  • Osteogenesis Imperfecta / complications
  • Osteogenesis Imperfecta / diagnostic imaging
  • Osteogenesis Imperfecta / genetics*
  • Osteogenesis Imperfecta / pathology
  • Phenotype
  • Procollagen-Proline Dioxygenase / genetics*
  • Protein Disulfide-Isomerases / genetics*

Substances

  • COL1A2 protein, human
  • Collagen Type I
  • NBAS protein, human
  • Neoplasm Proteins
  • Procollagen-Proline Dioxygenase
  • P4HB protein, human
  • Protein Disulfide-Isomerases

Supplementary concepts

  • Cole Carpenter syndrome