Distribution and preservation of the components of the engulfment. What is beyond representative genomes?

PLoS One. 2021 Mar 2;16(3):e0246651. doi: 10.1371/journal.pone.0246651. eCollection 2021.

Abstract

Engulfment requires the coordinated, targeted synthesis and degradation of peptidoglycan at the leading edge of the engulfing membrane to allow the mother cell to completely engulf the forespore. Proteins such as the DMP and Q:AH complexes in Bacillus subtilis are essential for engulfment, as are a set of accessory proteins including GerM and SpoIIB, among others. Experimental and bioinformatic studies of these proteins in bacteria distinct from Bacillus subtilis indicate that fundamental differences exist regarding the organization and mechanisms used to successfully perform engulfment. As a consequence, the distribution and prevalence of the proteins involved in engulfment and other proteins that participate in different sporulation stages have been studied using bioinformatic approaches. These works are based on the prediction of orthologs in the genomes of representative Firmicutes and have been helpful in tracing hypotheses about the origin and evolution of sporulation genes, some of which have been postulated as sporulation signatures. To date, an extensive study of these signatures outside of the representative Firmicutes is not available. Here, we asked whether phyletic profiles of proteins involved in engulfment can be used as signatures able to describe the sporulation phenotype. We tested this hypothesis in a set of 954 Firmicutes, finding preserved phyletic profiles defining signatures at the genus level. Finally, a phylogenetic reconstruction based on non-redundant phyletic profiles at the family level shows the non-monophyletic origin of these proteins due to gain/loss events along the phylum Firmicutes.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Bacillus subtilis / genetics
  • Cell Membrane / metabolism*
  • Cell Membrane / microbiology*
  • Cell Wall / metabolism
  • Genomics*
  • Peptidoglycan / metabolism*
  • Spores, Bacterial / genetics

Substances

  • Peptidoglycan

Associated data

  • figshare/10.6084/m9.figshare.13338677.v1

Grants and funding

This work was supported by grant IN202118 from Programa de Apoyo a Proyectos de Investigación e Innovación Tecnológica PAPIIT-UNAM awarded to Rosa-María Gutiérrez-Ríos. To Consejo Nacional de Ciencia y Tecnología CONACyT for the scholarships that supported, Lizeth Soto-Avila, Walter Santos and Nori Castañeda-Gómez. The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.