GWAS of three molecular traits highlights core genes and pathways alongside a highly polygenic background

Elife. 2021 Feb 15:10:e58615. doi: 10.7554/eLife.58615.

Abstract

Genome-wide association studies (GWAS) have been used to study the genetic basis of a wide variety of complex diseases and other traits. We describe UK Biobank GWAS results for three molecular traits-urate, IGF-1, and testosterone-with better-understood biology than most other complex traits. We find that many of the most significant hits are readily interpretable. We observe huge enrichment of associations near genes involved in the relevant biosynthesis, transport, or signaling pathways. We show how GWAS data illuminate the biology of each trait, including differences in testosterone regulation between females and males. At the same time, even these molecular traits are highly polygenic, with many thousands of variants spread across the genome contributing to trait variance. In summary, for these three molecular traits we identify strong enrichment of signal in putative core gene sets, even while most of the SNP-based heritability is driven by a massively polygenic background.

Keywords: biomarkers; complex traits; genetics; genome-wide association study; genomics; human; igf-1; testosterone; urate.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Databases, Genetic
  • Female
  • Genome-Wide Association Study*
  • Humans
  • Insulin-Like Growth Factor I / genetics*
  • Insulin-Like Growth Factor I / metabolism
  • Male
  • Multifactorial Inheritance*
  • Polymorphism, Single Nucleotide
  • Quantitative Trait Loci
  • Sex Factors
  • Testosterone / blood*
  • United Kingdom
  • Uric Acid / blood*
  • White People / genetics

Substances

  • IGF1 protein, human
  • Uric Acid
  • Testosterone
  • Insulin-Like Growth Factor I

Associated data

  • figshare/10.6084/m9.figshare.c.5304500.v1