Identification of LncRNAs Associated With FOLFOX Chemoresistance in mCRC and Construction of a Predictive Model

Yiyi Zhang; Meifang Xu; Yanwu Sun; Ying Chen; Pan Chi; Zongbin Xu; Xingrong Lu

doi:10.3389/fcell.2020.609832

Identification of LncRNAs Associated With FOLFOX Chemoresistance in mCRC and Construction of a Predictive Model

Front Cell Dev Biol. 2021 Jan 28:8:609832. doi: 10.3389/fcell.2020.609832. eCollection 2020.

Authors

Yiyi Zhang¹, Meifang Xu², Yanwu Sun¹, Ying Chen³, Pan Chi¹, Zongbin Xu¹, Xingrong Lu¹

Affiliations

¹ Department of Colorectal Surgery, Fujian Medical University Union Hospital, Fuzhou, China.
² Department of Pathology, Fujian Medical University Union Hospital, Fuzhou, China.
³ Department of Plastic Surgery, Fuzhou Dermatosis Prevention Hospital, Fuzhou, China.

Abstract

Oxaliplatin, fluorouracil plus leucovorin (FOLFOX) regimen is the first-line chemotherapy of patients with metastatic colorectal cancer (mCRC). However, studies are limited regarding long non-coding RNAs (lncRNAs) associated with FOLFOX chemotherapy response and prognosis. This study aimed to identify lncRNAs associated with FOLFOX chemotherapy response and prognosis in mCRC patients and to construct a predictive model. We analyzed lncRNA expression in 11 mCRC patients treated with FOLFOX chemotherapy before surgery (four sensitive, seven resistant) by Gene Array Chip. The top eight lncRNAs (AC007193.8, CTD-2008N3.1, FLJ36777, RP11-509J21.4, RP3-508I15.20, LOC100130950, RP5-1042K10.13, and LINC00476) for chemotherapy response were identified according to weighted correlation network analysis (WGCNA). A competitive endogenous RNA (ceRNA) network was then constructed. The crucial functions of the eight lncRNAs enriched in chemotherapy resistance were mitogen-activated protein kinase (MAPK) and proteoglycans signaling pathway. Receiver operating characteristic (ROC) analysis demonstrated that the eight lncRNAs were potent predictors for chemotherapy resistance of mCRC patients. To further identify a signature model lncRNA chemotherapy response and prognosis, the validation set consisted of 196 CRC patients from our center was used to validate lncRNAs expression and prognosis by quantitative PCR (qPCR). The expression of the eight lncRNAs expression between CRC cancerous and adjacent non-cancerous tissues was also verified in the validation data set to determine the prognostic value. A generalized linear model was established to predict the probability of chemotherapy resistance and survival. Our findings showed that the eight-lncRNA signature may be a novel biomarker for the prediction of FOLFOX chemotherapy response and prognosis of mCRC patients.

Keywords: FOLFOX; Gene Array Chip; WGCNA; colorectal cancer; lncRNA.