Precise base editing for the in vivo study of developmental signaling and human pathologies in zebrafish

Elife. 2021 Feb 12:10:e65552. doi: 10.7554/eLife.65552.

Abstract

While zebrafish is emerging as a new model system to study human diseases, an efficient methodology to generate precise point mutations at high efficiency is still lacking. Here we show that base editors can generate C-to-T point mutations with high efficiencies without other unwanted on-target mutations. In addition, we established a new editor variant recognizing an NAA protospacer adjacent motif, expanding the base editing possibilities in zebrafish. Using these approaches, we first generated a base change in the ctnnb1 gene, mimicking oncogenic an mutation of the human gene known to result in constitutive activation of endogenous Wnt signaling. Additionally, we precisely targeted several cancer-associated genes including cbl. With this last target, we created a new zebrafish dwarfism model. Together our findings expand the potential of zebrafish as a model system allowing new approaches for the endogenous modulation of cell signaling pathways and the generation of precise models of human genetic disease-associated mutations.

Keywords: CRISPR/Cas9; animal models; base editors; developmental biology; genetics; genomics; zebrafish.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Disease Models, Animal
  • Gene Editing
  • Humans
  • Mutation
  • Oncogenes*
  • Point Mutation*
  • Signal Transduction*
  • Zebrafish / metabolism
  • Zebrafish Proteins / genetics*
  • Zebrafish Proteins / metabolism
  • beta Catenin / genetics*
  • beta Catenin / metabolism

Substances

  • Zebrafish Proteins
  • beta Catenin
  • ctnnb1 protein, zebrafish