The Structural Properties of Odorants Modulate Their Association to Human Odorant Binding Protein

Biomolecules. 2021 Jan 22;11(2):145. doi: 10.3390/biom11020145.

Abstract

The binding of known odorant molecules to the human odorant-binding protein (hOBP) was evaluated in silico. Docking experiments elucidate the preferable binding site and binding affinity of odorant molecules to hOBP. The physicochemical properties molecular weight (MW), vapor pressure (Vp), hydrophobicity level (logP), number of double bonds (NºDB), degree of unsaturation (DoU) and the chemical classification, were selected for the study of odorant modulation. Here, these properties were analyzed concerning 30 pleasant and 30 unpleasant odorants, chosen to represent a wide variety of compounds and to determine their influence on the binding energy to hOBP. Our findings indicate that MW, logP and Vp are the most important odorant variables, directly correlated to odorant-binding energies (DGbinding) towards hOBP. Understanding how the odorants behave when complexed with the OBP in human olfaction opens new possibilities for the development of future biotechnological applications, including sensory devices, medical diagnosis, among others.

Keywords: human odorant-binding protein; molecular docking; molecular dynamics simulations; odorants; virtual screening.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Binding Sites
  • Carrier Proteins / chemistry*
  • Computer Simulation
  • Humans
  • Hydrophobic and Hydrophilic Interactions
  • Molecular Conformation
  • Molecular Dynamics Simulation
  • Molecular Weight
  • Odorants*
  • Principal Component Analysis
  • Protein Binding
  • Receptors, Odorant / chemistry*
  • Receptors, Odorant / metabolism
  • Thermodynamics

Substances

  • Carrier Proteins
  • Receptors, Odorant
  • odorant-binding protein