Evaluation and comparison of recombinase polymerase amplification coupled with lateral-flow bioassay for Escherichia coli O157:H7 detection using diifeerent genes

Sci Rep. 2021 Jan 21;11(1):1881. doi: 10.1038/s41598-021-81312-6.

Abstract

Shiga toxin-producing Escherichia coli serotype O157:H7 is a food and waterborne zoonotic pathogen causing gastroenteritis in humans. Rapid and simple detection in water and food is imperative to control its spread. However, traditional microbial detection approaches are time-consuming, expensive and complex to operate at the point-of-care without professional training. We present a rapid, simple, sensitive, specific and portable method for detection of E. coli O157:H7 in drinking water, apple juice and milk. We evaluated the effect of gene selection in detecting E. coli O157:H7 using recombinase polymerase amplification coupled with a lateral flow assay using rfbE, fliC and stx gene targets. As low as 100 ag and 1 fg DNA, 4-5 CFU/mL and 101 CFU/mL of E. coli O157:H7 was detected using the stx and rfbE gene targets respectively with 100% specificity, whilst the detection limit was 10 fg DNA and 102 CFU/mL for the fliC gene target, with 72.8% specificity. The RPA-LFA can be completed within 8 min at temperatures between 37 and 42 °C with reduced handling and simple equipment requirements. The test threshold amplification of the target was achieved in 5-30 min of incubation. In conclusion, RPA-LFA represents a potential rapid and effective alternative to conventional methods for the monitoring of E. coli O157:H7 in food and water.

Publication types

  • Comparative Study
  • Research Support, Non-U.S. Gov't

MeSH terms

  • Animals
  • Biological Assay / methods*
  • Carbohydrate Epimerases / genetics*
  • DNA, Bacterial / genetics
  • Drinking Water / microbiology
  • Escherichia coli O157 / genetics*
  • Escherichia coli O157 / isolation & purification
  • Escherichia coli Proteins / genetics*
  • Flagellin / genetics*
  • Food Microbiology / methods
  • Fruit and Vegetable Juices / microbiology
  • Humans
  • Milk / microbiology
  • Polymerase Chain Reaction / methods*
  • Recombinases / metabolism
  • Reproducibility of Results
  • Shiga Toxin / genetics*
  • Transaminases / genetics*

Substances

  • DNA, Bacterial
  • Drinking Water
  • Escherichia coli Proteins
  • FliC protein, E coli
  • Recombinases
  • Flagellin
  • Shiga Toxin
  • Transaminases
  • Carbohydrate Epimerases
  • perosamine synthetase