The complete chloroplast genome sequence of Vitis amurensis 'Shuanghong'

Dinghan Guo; Dongmei Li; Ruiqi Wang; Bin Han; Shiren Song; Wenping Xu; Shiping Wang; Lei Wang; Jianxin Niu; Chao Ma

doi:10.1080/23802359.2020.1780975

The complete chloroplast genome sequence of Vitis amurensis 'Shuanghong'

Mitochondrial DNA B Resour. 2020 Jun 22;5(3):2537-2538. doi: 10.1080/23802359.2020.1780975.

Authors

Dinghan Guo¹, Dongmei Li², Ruiqi Wang², Bin Han³, Shiren Song², Wenping Xu², Shiping Wang², Lei Wang², Jianxin Niu¹, Chao Ma^{2

4}

Affiliations

¹ Department of Horticulture, College of Agriculture, Shihezi University, Shihezi, Xinjiang, China.
² Department of Plant Science, School of Agriculture and Biology, Shanghai Jiao Tong University, Shanghai, China.
³ Hebei Academy of Agricultural and Forestry Sciences, Fruit Research Institute, Changli, China.
⁴ YunNan (DaLi) Research Institute, Shanghai Jiao Tong University, YunNan, China.

Abstract

Vitis amurensis 'Shuanghong' is a hybrid offspring of wild grapes. This study first releases the complete chloroplast genome of V. amurensis 'Shuanghong' and subjected the sample to phlogenetic analysis. The chloroplast genome is 161,558 bp in length, and comprises a small single-copy region (19,336 bp) and a large single-copy region (89,744 bp), which are seperated by a pair of inverted repeat regions. The chloroplast genome encodes 133 genes, including 88 CDSs, 8 rRNA genes, and 37 tRNA genes. The phylogenetic tree showed that V. amurensis 'Shuanghong' is most closely related to Vitis vinifera.

Keywords: Illumina sequencing; Vitis amurensis ‘Shuanghong’; chloroplast genome; phylogenetic analysis.

Grants and funding

This work was supported by the Yunnan Natural Science Foundation [Grant No. 2018FB072] and the National Key Research and Development Program of China [Grant No. 2018YFD1000300].