Mechanism of filament formation in UPA-promoted CARD8 and NLRP1 inflammasomes

Nat Commun. 2021 Jan 8;12(1):189. doi: 10.1038/s41467-020-20320-y.

Abstract

NLRP1 and CARD8 are related cytosolic sensors that upon activation form supramolecular signalling complexes known as canonical inflammasomes, resulting in caspase-1 activation, cytokine maturation and/or pyroptotic cell death. NLRP1 and CARD8 use their C-terminal (CT) fragments containing a caspase recruitment domain (CARD) and the UPA (conserved in UNC5, PIDD, and ankyrins) subdomain for self-oligomerization, which in turn form the platform to recruit the inflammasome adaptor ASC (apoptosis-associated speck-like protein containing a CARD) or caspase-1, respectively. Here, we report cryo-EM structures of NLRP1-CT and CARD8-CT assemblies, in which the respective CARDs form central helical filaments that are promoted by oligomerized, but flexibly linked, UPAs surrounding the filaments. Through biochemical and cellular approaches, we demonstrate that the UPA itself reduces the threshold needed for NLRP1-CT and CARD8-CT filament formation and signalling. Structural analyses provide insights on the mode of ASC recruitment by NLRP1-CT and the contrasting direct recruitment of caspase-1 by CARD8-CT. We also discover that subunits in the central NLRP1CARD filament dimerize with additional exterior CARDs, which roughly doubles its thickness and is unique among all known CARD filaments. Finally, we engineer and determine the structure of an ASCCARD-caspase-1CARD octamer, which suggests that ASC uses opposing surfaces for NLRP1, versus caspase-1, recruitment. Together these structures capture the architecture and specificity of the active NLRP1 and CARD8 inflammasomes in addition to key heteromeric CARD-CARD interactions governing inflammasome signalling.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • Adaptor Proteins, Signal Transducing / chemistry
  • Adaptor Proteins, Signal Transducing / genetics
  • Adaptor Proteins, Signal Transducing / metabolism*
  • Ankyrins / chemistry
  • Ankyrins / metabolism*
  • Apoptosis
  • Apoptosis Regulatory Proteins / chemistry
  • Apoptosis Regulatory Proteins / genetics
  • Apoptosis Regulatory Proteins / metabolism*
  • CARD Signaling Adaptor Proteins / chemistry
  • CARD Signaling Adaptor Proteins / genetics
  • CARD Signaling Adaptor Proteins / metabolism*
  • Caspase 1 / metabolism
  • Caspase Activation and Recruitment Domain
  • Cryoelectron Microscopy
  • Death Domain Receptor Signaling Adaptor Proteins / chemistry
  • Death Domain Receptor Signaling Adaptor Proteins / metabolism
  • HEK293 Cells
  • Humans
  • Inflammasomes / chemistry
  • Inflammasomes / metabolism*
  • Inflammasomes / ultrastructure
  • Models, Molecular
  • NLR Proteins
  • Neoplasm Proteins / chemistry
  • Neoplasm Proteins / genetics
  • Neoplasm Proteins / metabolism*
  • Protein Interaction Domains and Motifs
  • Signal Transduction

Substances

  • Adaptor Proteins, Signal Transducing
  • Ankyrins
  • Apoptosis Regulatory Proteins
  • CARD Signaling Adaptor Proteins
  • CARD8 protein, human
  • Death Domain Receptor Signaling Adaptor Proteins
  • Inflammasomes
  • NLR Proteins
  • NLRP1 protein, human
  • Neoplasm Proteins
  • PIDD1 protein, human
  • Caspase 1