Modeling the dynamic behaviors of the COPI vesicle formation regulators, the small GTPase Arf1 and its activating Sec7 guanine nucleotide exchange factor GBF1 on Golgi membranes

Mol Biol Cell. 2021 Mar 1;32(5):446-459. doi: 10.1091/mbc.E20-09-0587. Epub 2021 Jan 6.

Abstract

The components and subprocesses underlying the formation of COPI-coated vesicles at the Golgi are well understood. The coating cascade is initiated after the small GTPase Arf1 is activated by the Sec7 domain-containing guanine nucleotide exchange factor GBF1 (Golgi brefeldin A resistant guanine nucleotide exchange factor 1). This causes a conformational shift within Arf1 that facilitates stable association of Arf1 with the membrane, a process required for subsequent recruitment of the COPI coat. Although we have atomic-level knowledge of Arf1 activation by Sec7 domain-containing GEFs, our understanding of the biophysical processes regulating Arf1 and GBF1 dynamics is limited. We used fluorescence recovery after photobleaching data and kinetic Monte Carlo simulation to assess the behavior of Arf1 and GBF1 during COPI vesicle formation in live cells. Our analyses suggest that Arf1 and GBF1 associate with Golgi membranes independently, with an excess of GBF1 relative to Arf1. Furthermore, the GBF1-mediated Arf1 activation is much faster than GBF1 cycling on/off the membrane, suggesting that GBF1 is regulated by processes other than its interactions Arf1. Interestingly, modeling the behavior of the catalytically inactive GBF1/E794K mutant stabilized on the membrane is inconsistent with the formation of a stable complex between it and an endogenous Arf1 and suggests that GBF1/E794K is stabilized on the membrane independently of complex formation.

Publication types

  • Research Support, N.I.H., Extramural
  • Research Support, U.S. Gov't, Non-P.H.S.

MeSH terms

  • ADP-Ribosylation Factor 1 / metabolism*
  • ADP-Ribosylation Factor 1 / physiology
  • ADP-Ribosylation Factors / metabolism
  • COP-Coated Vesicles / metabolism*
  • COP-Coated Vesicles / physiology
  • Coat Protein Complex I / metabolism
  • Endocytosis
  • Endoplasmic Reticulum / metabolism
  • Fluorescence Recovery After Photobleaching / methods
  • Golgi Apparatus / metabolism
  • Guanine Nucleotide Exchange Factors / metabolism*
  • Guanine Nucleotide Exchange Factors / physiology
  • HeLa Cells
  • Humans
  • Kinetics
  • Monomeric GTP-Binding Proteins / metabolism
  • Monte Carlo Method
  • Protein Binding
  • Protein Transport

Substances

  • Coat Protein Complex I
  • GBF1 protein, human
  • Guanine Nucleotide Exchange Factors
  • Sec7 guanine nucleotide exchange factors
  • ADP-Ribosylation Factor 1
  • ADP-Ribosylation Factors
  • ARF1 protein, human
  • Monomeric GTP-Binding Proteins