Engineering ribose-5-phosphate isomerase B from a central carbon metabolic enzyme to a promising sugar biocatalyst

Appl Microbiol Biotechnol. 2021 Jan;105(2):509-523. doi: 10.1007/s00253-020-11075-z. Epub 2021 Jan 4.

Abstract

Ribose-5-phosphate isomerase B (RpiB) was first identified in the pentose phosphate pathway responsible for the inter-conversion of ribose-5-phosphate and ribulose-5-phosphate. Though there are seldom key enzymes in central carbon metabolic system developed as useful biocatalysts, RpiB with the advantages of wide substrate scope and high stereoselectivity has become a potential biotechnological tool to fulfill the demand of rare sugars currently. In this review, the pivotal roles of RpiB in carbon metabolism are summarized, and their sequence identity and structural similarity are discussed. Substrate binding and catalytic mechanisms are illustrated to provide solid foundations for enzyme engineering. Interesting differences in origin, physiological function, structure, and catalytic mechanism between RpiB and ribose-5-phosphate isomerase A are introduced. Moreover, enzyme engineering efforts for rare sugar production are stressed, and prospects of future development are concluded briefly in the viewpoint of biocatalysis. Aided by the progresses of structural and computational biology, the application of RpiB will be promoted greatly in the preparation of valuable molecules. KEY POINTS: • Detailed illustration of RpiB's vital function in central carbon metabolism. • Potential of RpiB in sequence, substrate scope, and mechanism for application. • Enzyme engineering efforts to promote RpiB in the preparation of rare sugars.

Keywords: Biocatalysis; Central carbon metabolism; Enzyme engineering; Rare sugar; Ribose-5-phosphate isomerase B; Substrate scope.

Publication types

  • Review

MeSH terms

  • Aldose-Ketose Isomerases* / genetics
  • Aldose-Ketose Isomerases* / metabolism
  • Carbon
  • Pentose Phosphate Pathway
  • Sugars*

Substances

  • Sugars
  • Carbon
  • Aldose-Ketose Isomerases
  • ribosephosphate isomerase